Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20137 and SM_b20138 are separated by 39 nucleotides SM_b20138 and SM_b20139 are separated by 311 nucleotides SM_b20139 and SM_b20140 are separated by 19 nucleotides
SM_b20137: SM_b20137 - hypothetical protein, at 151,195 to 152,136
_b20137
SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102
_b20138
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 151.206 kb on + strand at 151.207 kb on - strand at 151.238 kb on + strand at 151.238 kb on + strand at 151.239 kb on - strand at 151.242 kb on + strand at 151.518 kb on - strand, within SM_b20137 at 151.562 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand, within SM_b20137 at 151.655 kb on + strand at 151.656 kb on - strand, within SM_b20137 at 151.656 kb on - strand, within SM_b20137 at 151.853 kb on + strand, within SM_b20137 at 151.853 kb on + strand, within SM_b20137 at 151.907 kb on + strand, within SM_b20137 at 151.908 kb on - strand, within SM_b20137 at 151.908 kb on - strand, within SM_b20137 at 151.916 kb on + strand, within SM_b20137 at 151.965 kb on + strand, within SM_b20137 at 152.025 kb on + strand, within SM_b20137 at 152.026 kb on - strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.027 kb on + strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.028 kb on - strand, within SM_b20137 at 152.139 kb on + strand at 152.139 kb on + strand at 152.140 kb on - strand at 152.140 kb on - strand at 152.291 kb on + strand, within SM_b20138 at 152.291 kb on + strand, within SM_b20138 at 152.292 kb on - strand, within SM_b20138 at 152.478 kb on - strand, within SM_b20138 at 152.478 kb on - strand, within SM_b20138 at 152.523 kb on - strand, within SM_b20138 at 152.616 kb on - strand, within SM_b20138 at 152.616 kb on - strand, within SM_b20138 at 152.711 kb on + strand, within SM_b20138 at 152.754 kb on - strand, within SM_b20138 at 152.802 kb on - strand, within SM_b20138 at 152.802 kb on - strand, within SM_b20138 at 152.813 kb on + strand at 152.876 kb on + strand, within SM_b20138 at 152.876 kb on + strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.924 kb on + strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.990 kb on + strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.993 kb on + strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 153.087 kb on + strand at 153.258 kb on + strand at 153.268 kb on + strand at 153.268 kb on + strand at 153.271 kb on + strand at 153.272 kb on - strand at 153.290 kb on + strand at 153.290 kb on + strand at 153.291 kb on - strand at 153.587 kb on + strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.698 kb on + strand, within SM_b20139 at 153.887 kb on + strand at 154.100 kb on + strand, within SM_b20140 at 154.101 kb on - strand, within SM_b20140
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 151,206 + -0.6 151,207 - -1.9 151,238 + -0.8 151,238 + +0.0 151,239 - -0.5 151,242 + -0.6 151,518 - SM_b20137 0.34 -0.3 151,562 + SM_b20137 0.39 -1.2 151,655 + SM_b20137 0.49 +0.3 151,655 + SM_b20137 0.49 -1.2 151,655 + SM_b20137 0.49 -0.2 151,655 + SM_b20137 0.49 +0.2 151,655 + +1.2 151,656 - SM_b20137 0.49 -0.1 151,656 - SM_b20137 0.49 +1.1 151,853 + SM_b20137 0.70 +1.0 151,853 + SM_b20137 0.70 +1.9 151,907 + SM_b20137 0.76 +0.4 151,908 - SM_b20137 0.76 -0.1 151,908 - SM_b20137 0.76 +0.9 151,916 + SM_b20137 0.77 -0.2 151,965 + SM_b20137 0.82 -1.0 152,025 + SM_b20137 0.88 +0.4 152,026 - SM_b20137 0.88 -1.1 152,027 + SM_b20137 0.88 +0.3 152,027 + SM_b20137 0.88 +0.1 152,027 + SM_b20137 0.88 -0.9 152,027 + SM_b20137 0.88 +1.9 152,027 + SM_b20137 0.88 +1.1 152,028 - SM_b20137 0.88 +1.0 152,028 - SM_b20137 0.88 -0.3 152,028 - SM_b20137 0.88 -0.1 152,028 - SM_b20137 0.88 -0.4 152,028 - SM_b20137 0.88 -1.7 152,028 - SM_b20137 0.88 -1.7 152,139 + +0.3 152,139 + +0.5 152,140 - -2.5 152,140 - +0.5 152,291 + SM_b20138 0.12 -0.0 152,291 + SM_b20138 0.12 +0.6 152,292 - SM_b20138 0.13 +0.4 152,478 - SM_b20138 0.33 +0.8 152,478 - SM_b20138 0.33 +1.0 152,523 - SM_b20138 0.37 -0.7 152,616 - SM_b20138 0.47 -0.9 152,616 - SM_b20138 0.47 +0.4 152,711 + SM_b20138 0.58 +0.0 152,754 - SM_b20138 0.62 +0.4 152,802 - SM_b20138 0.68 +0.1 152,802 - SM_b20138 0.68 -0.4 152,813 + +0.4 152,876 + SM_b20138 0.76 +0.8 152,876 + SM_b20138 0.76 +0.6 152,877 - SM_b20138 0.76 -0.2 152,877 - SM_b20138 0.76 +0.1 152,877 - SM_b20138 0.76 +0.8 152,877 - SM_b20138 0.76 -1.9 152,924 + SM_b20138 0.81 -0.5 152,925 - SM_b20138 0.81 +0.6 152,925 - SM_b20138 0.81 -1.7 152,925 - SM_b20138 0.81 +0.9 152,990 + SM_b20138 0.88 +0.4 152,991 - SM_b20138 0.88 +0.8 152,991 - SM_b20138 0.88 +2.4 152,991 - SM_b20138 0.88 -2.9 152,991 - SM_b20138 0.88 +1.1 152,993 + SM_b20138 0.88 +1.6 152,994 - SM_b20138 0.88 -2.0 152,994 - SM_b20138 0.88 +0.5 152,994 - SM_b20138 0.88 +1.2 153,087 + +0.2 153,258 + +0.4 153,268 + -2.3 153,268 + -0.4 153,271 + -1.3 153,272 - +1.4 153,290 + +0.7 153,290 + +0.0 153,291 - -0.0 153,587 + SM_b20139 0.35 +1.1 153,588 - SM_b20139 0.35 -1.0 153,588 - SM_b20139 0.35 -0.3 153,588 - SM_b20139 0.35 -0.9 153,698 + SM_b20139 0.57 -0.7 153,887 + +0.4 154,100 + SM_b20140 0.20 -0.6 154,101 - SM_b20140 0.20 -0.6
Or see this region's nucleotide sequence