Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20123 and SM_b20124 are separated by 121 nucleotides SM_b20124 and SM_b20125 are separated by 9 nucleotides SM_b20125 and SM_b20126 are separated by 8 nucleotides
SM_b20123: SM_b20123 - transcriptional regulator, at 134,261 to 135,157
_b20123
SM_b20124: SM_b20124 - sugar ABC transporter ATP-binding protein, at 135,279 to 136,805
_b20124
SM_b20125: SM_b20125 - sugar ABC transporter permease, at 136,815 to 137,747
_b20125
SM_b20126: SM_b20126 - sugar ABC transporter permease, at 137,756 to 138,853
_b20126
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 134.496 kb on + strand, within SM_b20123 at 134.497 kb on - strand, within SM_b20123 at 134.793 kb on - strand, within SM_b20123 at 134.793 kb on - strand, within SM_b20123 at 134.922 kb on - strand, within SM_b20123 at 135.070 kb on + strand at 135.098 kb on + strand at 135.162 kb on - strand at 135.253 kb on - strand at 135.376 kb on + strand at 135.376 kb on + strand at 135.376 kb on + strand at 135.377 kb on - strand at 135.377 kb on - strand at 135.377 kb on - strand at 135.516 kb on - strand, within SM_b20124 at 135.792 kb on - strand, within SM_b20124 at 135.821 kb on - strand, within SM_b20124 at 135.972 kb on + strand, within SM_b20124 at 135.972 kb on + strand, within SM_b20124 at 135.973 kb on - strand at 135.973 kb on - strand, within SM_b20124 at 136.069 kb on + strand, within SM_b20124 at 136.070 kb on - strand, within SM_b20124 at 136.140 kb on - strand, within SM_b20124 at 136.334 kb on - strand, within SM_b20124 at 136.449 kb on + strand, within SM_b20124 at 136.449 kb on + strand, within SM_b20124 at 136.450 kb on - strand, within SM_b20124 at 136.494 kb on + strand, within SM_b20124 at 136.494 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.501 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.590 kb on + strand, within SM_b20124 at 136.591 kb on - strand, within SM_b20124 at 136.591 kb on - strand, within SM_b20124 at 136.828 kb on + strand at 136.875 kb on + strand at 136.875 kb on + strand at 136.876 kb on - strand at 136.876 kb on - strand at 136.876 kb on - strand at 136.924 kb on + strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 136.973 kb on - strand, within SM_b20125 at 137.145 kb on - strand, within SM_b20125 at 137.249 kb on - strand, within SM_b20125 at 137.290 kb on + strand, within SM_b20125 at 137.290 kb on + strand, within SM_b20125 at 137.291 kb on - strand, within SM_b20125 at 137.732 kb on + strand at 137.732 kb on + strand at 137.733 kb on - strand at 137.736 kb on + strand at 137.736 kb on + strand at 137.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 134,496 + SM_b20123 0.26 -2.4 134,497 - SM_b20123 0.26 +0.1 134,793 - SM_b20123 0.59 -0.8 134,793 - SM_b20123 0.59 +0.3 134,922 - SM_b20123 0.74 -0.4 135,070 + +1.8 135,098 + +1.0 135,162 - -0.8 135,253 - +0.0 135,376 + -0.0 135,376 + +1.2 135,376 + +1.3 135,377 - +1.3 135,377 - +3.7 135,377 - -1.0 135,516 - SM_b20124 0.16 +1.3 135,792 - SM_b20124 0.34 +0.0 135,821 - SM_b20124 0.35 -2.7 135,972 + SM_b20124 0.45 +2.1 135,972 + SM_b20124 0.45 -0.0 135,973 - -0.2 135,973 - SM_b20124 0.45 +0.3 136,069 + SM_b20124 0.52 +1.0 136,070 - SM_b20124 0.52 +0.1 136,140 - SM_b20124 0.56 +0.0 136,334 - SM_b20124 0.69 -0.6 136,449 + SM_b20124 0.77 +0.2 136,449 + SM_b20124 0.77 -0.9 136,450 - SM_b20124 0.77 +0.1 136,494 + SM_b20124 0.80 +1.9 136,494 + SM_b20124 0.80 +1.2 136,501 + SM_b20124 0.80 -0.9 136,501 + SM_b20124 0.80 -0.9 136,501 + SM_b20124 0.80 +0.6 136,590 + SM_b20124 0.86 +0.5 136,590 + SM_b20124 0.86 +0.5 136,590 + SM_b20124 0.86 -0.5 136,591 - SM_b20124 0.86 +0.7 136,591 - SM_b20124 0.86 -1.1 136,828 + -0.1 136,875 + +1.7 136,875 + -0.1 136,876 - +4.0 136,876 - -2.0 136,876 - +1.0 136,924 + SM_b20125 0.12 +0.8 136,973 - SM_b20125 0.17 +0.6 136,973 - SM_b20125 0.17 +0.8 136,973 - SM_b20125 0.17 -0.2 136,973 - SM_b20125 0.17 +0.8 137,145 - SM_b20125 0.35 -2.7 137,249 - SM_b20125 0.47 +1.4 137,290 + SM_b20125 0.51 -2.2 137,290 + SM_b20125 0.51 -0.9 137,291 - SM_b20125 0.51 -0.1 137,732 + -1.1 137,732 + +0.4 137,733 - +0.2 137,736 + -0.0 137,736 + +0.4 137,736 + -1.6
Or see this region's nucleotide sequence