Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20102 and SM_b20103 are separated by 214 nucleotides SM_b20103 and SM_b20104 are separated by 75 nucleotides SM_b20104 and SM_b20105 are separated by 101 nucleotides
SM_b20102: SM_b20102 - acetoin catabolism regulatory protein, at 111,176 to 113,059
_b20102
SM_b20103: SM_b20103 - FAD-dependent oxidoreductase, at 113,274 to 115,076
_b20103
SM_b20104: SM_b20104 - hypothetical protein, at 115,152 to 115,910
_b20104
SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644
_b20105
Position (kb)
113
114
115
116 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 112.643 kb on + strand, within SM_b20102 at 112.644 kb on - strand, within SM_b20102 at 112.752 kb on + strand, within SM_b20102 at 112.753 kb on - strand, within SM_b20102 at 113.269 kb on + strand at 113.385 kb on + strand at 113.711 kb on + strand, within SM_b20103 at 113.758 kb on - strand, within SM_b20103 at 113.758 kb on - strand, within SM_b20103 at 113.895 kb on + strand, within SM_b20103 at 113.895 kb on + strand, within SM_b20103 at 113.928 kb on + strand, within SM_b20103 at 113.929 kb on - strand, within SM_b20103 at 113.943 kb on + strand, within SM_b20103 at 113.944 kb on - strand, within SM_b20103 at 113.944 kb on - strand, within SM_b20103 at 113.944 kb on - strand, within SM_b20103 at 113.945 kb on + strand, within SM_b20103 at 113.946 kb on - strand, within SM_b20103 at 114.012 kb on + strand, within SM_b20103 at 114.012 kb on + strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.013 kb on - strand, within SM_b20103 at 114.014 kb on + strand, within SM_b20103 at 114.015 kb on - strand, within SM_b20103 at 114.037 kb on - strand, within SM_b20103 at 114.037 kb on - strand, within SM_b20103 at 114.415 kb on - strand, within SM_b20103 at 114.549 kb on + strand, within SM_b20103 at 114.618 kb on + strand, within SM_b20103 at 114.619 kb on - strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.645 kb on - strand, within SM_b20103 at 114.777 kb on + strand, within SM_b20103 at 114.985 kb on - strand at 114.994 kb on - strand at 115.031 kb on - strand at 115.031 kb on - strand at 115.045 kb on - strand at 115.254 kb on - strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.368 kb on - strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.423 kb on - strand, within SM_b20104 at 115.440 kb on - strand, within SM_b20104 at 115.541 kb on + strand, within SM_b20104 at 115.541 kb on + strand at 115.541 kb on + strand, within SM_b20104 at 115.541 kb on + strand, within SM_b20104 at 115.542 kb on - strand, within SM_b20104 at 115.580 kb on - strand, within SM_b20104 at 115.588 kb on - strand, within SM_b20104 at 115.900 kb on + strand at 115.901 kb on - strand at 115.983 kb on + strand at 115.983 kb on + strand at 115.984 kb on - strand at 115.984 kb on - strand at 116.013 kb on + strand at 116.024 kb on + strand at 116.024 kb on + strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 112,643 + SM_b20102 0.78 -0.4 112,644 - SM_b20102 0.78 -2.3 112,752 + SM_b20102 0.84 +0.0 112,753 - SM_b20102 0.84 -0.8 113,269 + +0.4 113,385 + +0.1 113,711 + SM_b20103 0.24 -0.9 113,758 - SM_b20103 0.27 -2.2 113,758 - SM_b20103 0.27 -0.3 113,895 + SM_b20103 0.34 -1.2 113,895 + SM_b20103 0.34 -2.3 113,928 + SM_b20103 0.36 +2.8 113,929 - SM_b20103 0.36 +0.4 113,943 + SM_b20103 0.37 +0.1 113,944 - SM_b20103 0.37 +0.0 113,944 - SM_b20103 0.37 -0.9 113,944 - SM_b20103 0.37 -0.6 113,945 + SM_b20103 0.37 +0.1 113,946 - SM_b20103 0.37 -1.3 114,012 + SM_b20103 0.41 +0.1 114,012 + SM_b20103 0.41 -0.6 114,013 - SM_b20103 0.41 +0.5 114,013 - SM_b20103 0.41 -1.5 114,013 - SM_b20103 0.41 +0.1 114,013 - SM_b20103 0.41 +1.3 114,013 - SM_b20103 0.41 -0.7 114,014 + SM_b20103 0.41 +1.7 114,015 - SM_b20103 0.41 +0.1 114,037 - SM_b20103 0.42 +2.0 114,037 - SM_b20103 0.42 -0.3 114,415 - SM_b20103 0.63 -0.5 114,549 + SM_b20103 0.71 -0.1 114,618 + SM_b20103 0.75 -1.5 114,619 - SM_b20103 0.75 -1.1 114,642 + SM_b20103 0.76 -2.1 114,642 + SM_b20103 0.76 +0.5 114,642 + SM_b20103 0.76 -0.7 114,643 - SM_b20103 0.76 +0.9 114,643 - SM_b20103 0.76 -0.1 114,643 - SM_b20103 0.76 +1.7 114,645 - SM_b20103 0.76 -1.9 114,777 + SM_b20103 0.83 -1.0 114,985 - +0.0 114,994 - -0.4 115,031 - -0.7 115,031 - +0.3 115,045 - +0.6 115,254 - SM_b20104 0.13 +0.5 115,367 + SM_b20104 0.28 -2.7 115,367 + SM_b20104 0.28 -0.5 115,367 + SM_b20104 0.28 -1.1 115,368 - SM_b20104 0.28 -1.7 115,369 + SM_b20104 0.29 -0.5 115,369 + SM_b20104 0.29 -1.4 115,369 + SM_b20104 0.29 -0.4 115,369 + SM_b20104 0.29 +0.1 115,370 - SM_b20104 0.29 +0.4 115,370 - SM_b20104 0.29 +0.6 115,370 - SM_b20104 0.29 -2.2 115,423 - SM_b20104 0.36 -1.2 115,440 - SM_b20104 0.38 +0.6 115,541 + SM_b20104 0.51 +0.3 115,541 + +2.4 115,541 + SM_b20104 0.51 -1.0 115,541 + SM_b20104 0.51 +0.6 115,542 - SM_b20104 0.51 +0.7 115,580 - SM_b20104 0.56 +1.4 115,588 - SM_b20104 0.57 -1.2 115,900 + +0.3 115,901 - -0.3 115,983 + +1.2 115,983 + +0.1 115,984 - -1.5 115,984 - -0.5 116,013 + -1.5 116,024 + +0.7 116,024 + -2.8 116,025 - -0.1 116,025 - -1.0 116,025 - -1.7 116,025 - -0.0
Or see this region's nucleotide sequence