Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20046 and SM_b20047 are separated by 366 nucleotides SM_b20047 and SM_b20048 are separated by 168 nucleotides SM_b20048 and SM_b20049 are separated by 118 nucleotides
SM_b20046: SM_b20046 - replication protein A, at 57,564 to 58,760
_b20046
SM_b20047: SM_b20047 - hypothetical protein, at 59,127 to 59,315
_b20047
SM_b20048: SM_b20048 - transcriptional regulator, at 59,484 to 60,191
_b20048
SM_b20049: SM_b20049 - elongation factor G, at 60,310 to 62,271
_b20049
Position (kb)
59
60
61 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 58.816 kb on - strand at 59.042 kb on - strand at 59.111 kb on - strand at 59.122 kb on - strand at 59.134 kb on - strand at 59.134 kb on - strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.310 kb on + strand at 59.311 kb on - strand at 59.311 kb on - strand at 59.405 kb on + strand at 59.406 kb on - strand at 59.454 kb on + strand at 59.454 kb on + strand at 59.455 kb on - strand at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.677 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.738 kb on - strand, within SM_b20048 at 59.757 kb on + strand, within SM_b20048 at 59.758 kb on - strand, within SM_b20048 at 59.764 kb on - strand, within SM_b20048 at 60.321 kb on + strand at 60.321 kb on + strand at 60.580 kb on + strand, within SM_b20049 at 60.581 kb on - strand, within SM_b20049 at 60.656 kb on + strand, within SM_b20049 at 60.940 kb on + strand, within SM_b20049
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 58,816 - +2.6 59,042 - -1.0 59,111 - +0.9 59,122 - -0.8 59,134 - -1.2 59,134 - +1.2 59,310 + -1.8 59,310 + -0.1 59,310 + +0.1 59,310 + -0.3 59,310 + +2.2 59,311 - -0.1 59,311 - +1.8 59,405 + -0.9 59,406 - -1.3 59,454 + -1.3 59,454 + -1.1 59,455 - -2.4 59,677 - SM_b20048 0.27 +0.0 59,677 - SM_b20048 0.27 -4.3 59,677 - +0.1 59,677 - SM_b20048 0.27 -2.7 59,677 - SM_b20048 0.27 -2.0 59,677 - SM_b20048 0.27 -1.7 59,738 - SM_b20048 0.36 -1.9 59,738 - SM_b20048 0.36 -1.4 59,738 - SM_b20048 0.36 -2.3 59,738 - SM_b20048 0.36 -1.5 59,738 - SM_b20048 0.36 -0.7 59,738 - SM_b20048 0.36 -2.5 59,757 + SM_b20048 0.39 -0.4 59,758 - SM_b20048 0.39 -3.3 59,764 - SM_b20048 0.40 -1.2 60,321 + -0.5 60,321 + -2.3 60,580 + SM_b20049 0.14 -0.1 60,581 - SM_b20049 0.14 +0.1 60,656 + SM_b20049 0.18 -2.4 60,940 + SM_b20049 0.32 -0.1
Or see this region's nucleotide sequence