Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20048

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20046 and SM_b20047 are separated by 366 nucleotidesSM_b20047 and SM_b20048 are separated by 168 nucleotidesSM_b20048 and SM_b20049 are separated by 118 nucleotides SM_b20046: SM_b20046 - replication protein A, at 57,564 to 58,760 _b20046 SM_b20047: SM_b20047 - hypothetical protein, at 59,127 to 59,315 _b20047 SM_b20048: SM_b20048 - transcriptional regulator, at 59,484 to 60,191 _b20048 SM_b20049: SM_b20049 - elongation factor G, at 60,310 to 62,271 _b20049 Position (kb) 59 60 61Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 58.816 kb on - strandat 59.042 kb on - strandat 59.111 kb on - strandat 59.122 kb on - strandat 59.134 kb on - strandat 59.134 kb on - strandat 59.310 kb on + strandat 59.310 kb on + strandat 59.310 kb on + strandat 59.310 kb on + strandat 59.310 kb on + strandat 59.311 kb on - strandat 59.311 kb on - strandat 59.405 kb on + strandat 59.406 kb on - strandat 59.454 kb on + strandat 59.454 kb on + strandat 59.455 kb on - strandat 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strandat 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strand, within SM_b20048at 59.677 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.738 kb on - strand, within SM_b20048at 59.757 kb on + strand, within SM_b20048at 59.758 kb on - strand, within SM_b20048at 59.764 kb on - strand, within SM_b20048at 60.321 kb on + strandat 60.321 kb on + strandat 60.580 kb on + strand, within SM_b20049at 60.581 kb on - strand, within SM_b20049at 60.656 kb on + strand, within SM_b20049at 60.940 kb on + strand, within SM_b20049

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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58,816 - +2.6
59,042 - -1.0
59,111 - +0.9
59,122 - -0.8
59,134 - -1.2
59,134 - +1.2
59,310 + -1.8
59,310 + -0.1
59,310 + +0.1
59,310 + -0.3
59,310 + +2.2
59,311 - -0.1
59,311 - +1.8
59,405 + -0.9
59,406 - -1.3
59,454 + -1.3
59,454 + -1.1
59,455 - -2.4
59,677 - SM_b20048 0.27 +0.0
59,677 - SM_b20048 0.27 -4.3
59,677 - +0.1
59,677 - SM_b20048 0.27 -2.7
59,677 - SM_b20048 0.27 -2.0
59,677 - SM_b20048 0.27 -1.7
59,738 - SM_b20048 0.36 -1.9
59,738 - SM_b20048 0.36 -1.4
59,738 - SM_b20048 0.36 -2.3
59,738 - SM_b20048 0.36 -1.5
59,738 - SM_b20048 0.36 -0.7
59,738 - SM_b20048 0.36 -2.5
59,757 + SM_b20048 0.39 -0.4
59,758 - SM_b20048 0.39 -3.3
59,764 - SM_b20048 0.40 -1.2
60,321 + -0.5
60,321 + -2.3
60,580 + SM_b20049 0.14 -0.1
60,581 - SM_b20049 0.14 +0.1
60,656 + SM_b20049 0.18 -2.4
60,940 + SM_b20049 0.32 -0.1

Or see this region's nucleotide sequence