Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20014 and SM_b20015 are separated by 13 nucleotides SM_b20015 and SM_b20016 overlap by 4 nucleotides SM_b20016 and SM_b20017 overlap by 1 nucleotides
SM_b20014: SM_b20014 - transcriptional regulator, at 20,377 to 21,378
_b20014
SM_b20015: SM_b20015 - sugar ABC transporter permease, at 21,392 to 22,348
_b20015
SM_b20016: SM_b20016 - sugar ABC transporter permease, at 22,345 to 23,337
_b20016
SM_b20017: SM_b20017 - sugar ABC transporter ATP-binding protein, at 23,337 to 24,842
_b20017
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.555 kb on + strand, within SM_b20014 at 20.556 kb on - strand, within SM_b20014 at 20.837 kb on - strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 21.150 kb on - strand, within SM_b20014 at 21.237 kb on - strand, within SM_b20014 at 21.421 kb on - strand at 21.421 kb on - strand at 21.612 kb on + strand, within SM_b20015 at 21.612 kb on + strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.649 kb on - strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.771 kb on + strand, within SM_b20015 at 21.772 kb on - strand, within SM_b20015 at 21.772 kb on - strand, within SM_b20015 at 22.279 kb on - strand at 22.559 kb on + strand, within SM_b20016 at 22.655 kb on + strand, within SM_b20016 at 22.655 kb on + strand, within SM_b20016 at 22.656 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 23.127 kb on - strand, within SM_b20016 at 23.160 kb on + strand, within SM_b20016 at 23.161 kb on - strand, within SM_b20016 at 23.162 kb on + strand, within SM_b20016 at 23.162 kb on + strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 20,537 + SM_b20014 0.16 -0.3 20,537 + SM_b20014 0.16 -0.5 20,537 + SM_b20014 0.16 +0.3 20,537 + SM_b20014 0.16 -0.8 20,555 + SM_b20014 0.18 -0.4 20,556 - SM_b20014 0.18 +1.2 20,837 - SM_b20014 0.46 -3.5 20,838 + SM_b20014 0.46 +0.7 20,838 + SM_b20014 0.46 -0.1 20,839 - SM_b20014 0.46 +2.4 20,839 - SM_b20014 0.46 -0.3 21,150 - SM_b20014 0.77 -0.1 21,237 - SM_b20014 0.86 +0.6 21,421 - -1.4 21,421 - +0.0 21,612 + SM_b20015 0.23 -0.6 21,612 + SM_b20015 0.23 -0.6 21,613 - SM_b20015 0.23 +0.4 21,613 - SM_b20015 0.23 +1.4 21,613 - SM_b20015 0.23 -0.2 21,613 - SM_b20015 0.23 +0.2 21,649 - SM_b20015 0.27 -1.3 21,741 + SM_b20015 0.36 -0.6 21,741 + SM_b20015 0.36 -0.6 21,741 + SM_b20015 0.36 +1.0 21,742 - SM_b20015 0.37 -0.5 21,742 - SM_b20015 0.37 -3.0 21,742 - SM_b20015 0.37 +0.3 21,771 + SM_b20015 0.40 -0.6 21,772 - SM_b20015 0.40 -0.8 21,772 - SM_b20015 0.40 -0.3 22,279 - +0.6 22,559 + SM_b20016 0.22 -1.3 22,655 + SM_b20016 0.31 +0.5 22,655 + SM_b20016 0.31 -0.6 22,656 - SM_b20016 0.31 -0.3 22,794 - SM_b20016 0.45 +0.6 22,794 - SM_b20016 0.45 -0.5 22,794 - SM_b20016 0.45 -0.0 23,127 - SM_b20016 0.79 -1.2 23,160 + SM_b20016 0.82 -1.0 23,161 - SM_b20016 0.82 -3.2 23,162 + SM_b20016 0.82 -0.6 23,162 + SM_b20016 0.82 +4.0 23,163 - SM_b20016 0.82 -0.8 23,163 - SM_b20016 0.82 +0.0 23,163 - SM_b20016 0.82 -0.4
Or see this region's nucleotide sequence