Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25450

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25440 and RR42_RS25445 overlap by 4 nucleotidesRR42_RS25445 and RR42_RS25450 are separated by 84 nucleotidesRR42_RS25450 and RR42_RS25455 are separated by 249 nucleotides RR42_RS25440: RR42_RS25440 - acetone carboxylase subunit alpha, at 1,052,716 to 1,054,992 _RS25440 RR42_RS25445: RR42_RS25445 - hypothetical protein, at 1,054,989 to 1,055,867 _RS25445 RR42_RS25450: RR42_RS25450 - cobalamin biosynthesis protein, at 1,055,952 to 1,057,220 _RS25450 RR42_RS25455: RR42_RS25455 - acetyl-CoA acetyltransferase, at 1,057,470 to 1,058,654 _RS25455 Position (kb) 1055 1056 1057 1058Strain fitness (log2 ratio) -2 -1 0 1 2at 1055.231 kb on - strand, within RR42_RS25445at 1055.470 kb on - strand, within RR42_RS25445at 1055.470 kb on - strand, within RR42_RS25445at 1055.470 kb on - strand, within RR42_RS25445at 1055.574 kb on + strand, within RR42_RS25445at 1055.575 kb on - strand, within RR42_RS25445at 1055.575 kb on - strand, within RR42_RS25445at 1055.700 kb on + strand, within RR42_RS25445at 1055.701 kb on - strand, within RR42_RS25445at 1055.733 kb on - strand, within RR42_RS25445at 1055.880 kb on + strandat 1055.880 kb on + strandat 1055.881 kb on - strandat 1055.881 kb on - strandat 1055.881 kb on - strandat 1055.881 kb on - strandat 1055.906 kb on + strandat 1056.015 kb on - strandat 1056.181 kb on + strand, within RR42_RS25450at 1056.181 kb on + strand, within RR42_RS25450at 1056.181 kb on + strand, within RR42_RS25450at 1056.182 kb on - strand, within RR42_RS25450at 1056.191 kb on + strand, within RR42_RS25450at 1056.191 kb on + strand, within RR42_RS25450at 1056.192 kb on - strand, within RR42_RS25450at 1056.271 kb on + strand, within RR42_RS25450at 1056.316 kb on - strand, within RR42_RS25450at 1056.351 kb on + strand, within RR42_RS25450at 1056.352 kb on - strand, within RR42_RS25450at 1056.352 kb on - strand, within RR42_RS25450at 1056.352 kb on - strand, within RR42_RS25450at 1056.580 kb on + strand, within RR42_RS25450at 1056.581 kb on - strand, within RR42_RS25450at 1056.600 kb on + strand, within RR42_RS25450at 1056.601 kb on - strand, within RR42_RS25450at 1056.680 kb on + strand, within RR42_RS25450at 1056.714 kb on + strand, within RR42_RS25450at 1056.714 kb on + strand, within RR42_RS25450at 1056.715 kb on - strand, within RR42_RS25450at 1056.905 kb on - strand, within RR42_RS25450at 1057.238 kb on + strandat 1057.238 kb on + strandat 1057.242 kb on + strandat 1057.243 kb on - strandat 1057.422 kb on + strandat 1057.423 kb on - strandat 1057.974 kb on + strand, within RR42_RS25455

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,055,231 - RR42_RS25445 0.28 -0.7
1,055,470 - RR42_RS25445 0.55 -1.9
1,055,470 - RR42_RS25445 0.55 -0.4
1,055,470 - RR42_RS25445 0.55 +1.1
1,055,574 + RR42_RS25445 0.67 +1.2
1,055,575 - RR42_RS25445 0.67 +0.5
1,055,575 - RR42_RS25445 0.67 +0.4
1,055,700 + RR42_RS25445 0.81 +0.1
1,055,701 - RR42_RS25445 0.81 +0.2
1,055,733 - RR42_RS25445 0.85 -0.0
1,055,880 + -0.7
1,055,880 + -0.9
1,055,881 - +0.5
1,055,881 - -0.3
1,055,881 - -0.9
1,055,881 - +0.7
1,055,906 + +0.2
1,056,015 - -1.9
1,056,181 + RR42_RS25450 0.18 +0.0
1,056,181 + RR42_RS25450 0.18 -0.1
1,056,181 + RR42_RS25450 0.18 -0.3
1,056,182 - RR42_RS25450 0.18 +1.5
1,056,191 + RR42_RS25450 0.19 -1.9
1,056,191 + RR42_RS25450 0.19 +0.9
1,056,192 - RR42_RS25450 0.19 -1.6
1,056,271 + RR42_RS25450 0.25 +0.2
1,056,316 - RR42_RS25450 0.29 -1.0
1,056,351 + RR42_RS25450 0.31 -0.2
1,056,352 - RR42_RS25450 0.32 -1.0
1,056,352 - RR42_RS25450 0.32 -1.3
1,056,352 - RR42_RS25450 0.32 -2.0
1,056,580 + RR42_RS25450 0.49 +0.3
1,056,581 - RR42_RS25450 0.50 +0.5
1,056,600 + RR42_RS25450 0.51 +0.2
1,056,601 - RR42_RS25450 0.51 +0.1
1,056,680 + RR42_RS25450 0.57 +0.5
1,056,714 + RR42_RS25450 0.60 +1.0
1,056,714 + RR42_RS25450 0.60 -0.3
1,056,715 - RR42_RS25450 0.60 -0.6
1,056,905 - RR42_RS25450 0.75 +0.1
1,057,238 + -1.0
1,057,238 + -0.1
1,057,242 + -0.5
1,057,243 - +0.6
1,057,422 + -0.3
1,057,423 - +2.0
1,057,974 + RR42_RS25455 0.43 -1.1

Or see this region's nucleotide sequence