Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23045 and RR42_RS23050 are separated by 60 nucleotides RR42_RS23050 and RR42_RS23055 are separated by 55 nucleotides
RR42_RS23045: RR42_RS23045 - LysR family transcriptional regulator, at 504,680 to 505,585
_RS23045
RR42_RS23050: RR42_RS23050 - 4-oxalomesaconate tautomerase, at 505,646 to 506,725
_RS23050
RR42_RS23055: RR42_RS23055 - ABC transporter substrate-binding protein, at 506,781 to 507,728
_RS23055
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1 at 504.682 kb on - strand at 505.028 kb on + strand, within RR42_RS23045 at 505.028 kb on + strand, within RR42_RS23045 at 505.200 kb on - strand, within RR42_RS23045 at 505.222 kb on - strand, within RR42_RS23045 at 505.261 kb on - strand, within RR42_RS23045 at 505.261 kb on - strand, within RR42_RS23045 at 505.264 kb on - strand, within RR42_RS23045 at 505.264 kb on - strand, within RR42_RS23045 at 505.613 kb on + strand at 505.613 kb on + strand at 505.614 kb on - strand at 505.614 kb on - strand at 505.628 kb on - strand at 505.669 kb on - strand at 505.749 kb on + strand at 505.749 kb on + strand at 505.750 kb on - strand at 505.866 kb on + strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.908 kb on + strand, within RR42_RS23050 at 506.023 kb on + strand, within RR42_RS23050 at 506.075 kb on + strand, within RR42_RS23050 at 506.076 kb on - strand, within RR42_RS23050 at 506.086 kb on + strand, within RR42_RS23050 at 506.221 kb on + strand, within RR42_RS23050 at 506.513 kb on + strand, within RR42_RS23050 at 506.514 kb on - strand, within RR42_RS23050 at 506.760 kb on + strand at 506.761 kb on - strand at 506.766 kb on + strand at 506.789 kb on + strand at 506.790 kb on - strand at 506.994 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.161 kb on - strand, within RR42_RS23055 at 507.223 kb on - strand, within RR42_RS23055 at 507.268 kb on + strand, within RR42_RS23055 at 507.309 kb on + strand, within RR42_RS23055 at 507.413 kb on - strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 504,682 - +0.9 505,028 + RR42_RS23045 0.38 -0.1 505,028 + RR42_RS23045 0.38 -0.8 505,200 - RR42_RS23045 0.57 -0.6 505,222 - RR42_RS23045 0.60 -0.4 505,261 - RR42_RS23045 0.64 -0.3 505,261 - RR42_RS23045 0.64 -0.1 505,264 - RR42_RS23045 0.64 +0.7 505,264 - RR42_RS23045 0.64 -0.1 505,613 + -2.3 505,613 + -0.3 505,614 - +0.1 505,614 - +0.3 505,628 - -1.1 505,669 - -0.4 505,749 + +0.1 505,749 + +0.1 505,750 - +0.4 505,866 + RR42_RS23050 0.20 -0.3 505,867 - RR42_RS23050 0.20 +0.1 505,867 - RR42_RS23050 0.20 -1.1 505,867 - RR42_RS23050 0.20 -0.0 505,867 - RR42_RS23050 0.20 +0.4 505,867 - RR42_RS23050 0.20 +0.7 505,908 + RR42_RS23050 0.24 +0.3 506,023 + RR42_RS23050 0.35 -1.1 506,075 + RR42_RS23050 0.40 +0.0 506,076 - RR42_RS23050 0.40 +0.3 506,086 + RR42_RS23050 0.41 +0.9 506,221 + RR42_RS23050 0.53 -0.3 506,513 + RR42_RS23050 0.80 +0.1 506,514 - RR42_RS23050 0.80 +0.7 506,760 + -0.1 506,761 - -0.1 506,766 + +0.7 506,789 + +1.0 506,790 - +0.7 506,994 + RR42_RS23055 0.22 -0.4 507,023 + RR42_RS23055 0.26 +0.4 507,023 + RR42_RS23055 0.26 -0.3 507,024 - RR42_RS23055 0.26 +0.1 507,024 - RR42_RS23055 0.26 -1.2 507,084 + RR42_RS23055 0.32 -0.9 507,084 + RR42_RS23055 0.32 +0.2 507,161 - RR42_RS23055 0.40 -0.6 507,223 - RR42_RS23055 0.47 -1.8 507,268 + RR42_RS23055 0.51 +0.6 507,309 + RR42_RS23055 0.56 -1.1 507,413 - RR42_RS23055 0.67 +0.4 507,627 + RR42_RS23055 0.89 +0.9 507,627 + RR42_RS23055 0.89 -0.2 507,627 + RR42_RS23055 0.89 -0.4 507,628 - RR42_RS23055 0.89 -1.2 507,628 - RR42_RS23055 0.89 -0.3
Or see this region's nucleotide sequence