Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01065 and RR42_RS01070 are separated by 79 nucleotides RR42_RS01070 and RR42_RS01075 are separated by 294 nucleotides
RR42_RS01065: RR42_RS01065 - ATP-dependent protease ATP-binding subunit HslU, at 250,274 to 251,605
_RS01065
RR42_RS01070: RR42_RS01070 - nuclear export factor GLE1, at 251,685 to 252,197
_RS01070
RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073
_RS01075
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2 at 251.153 kb on + strand, within RR42_RS01065 at 251.153 kb on + strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.336 kb on + strand, within RR42_RS01065 at 251.336 kb on + strand, within RR42_RS01065 at 251.337 kb on - strand, within RR42_RS01065 at 251.337 kb on - strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.460 kb on - strand, within RR42_RS01065 at 251.460 kb on - strand, within RR42_RS01065 at 251.543 kb on + strand at 251.543 kb on + strand at 251.544 kb on - strand at 251.594 kb on + strand at 251.594 kb on + strand at 251.603 kb on + strand at 251.603 kb on + strand at 251.833 kb on + strand, within RR42_RS01070 at 251.833 kb on + strand, within RR42_RS01070 at 251.834 kb on - strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.963 kb on - strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.266 kb on - strand at 252.393 kb on - strand at 252.393 kb on - strand at 252.399 kb on + strand at 252.399 kb on + strand at 252.400 kb on - strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.594 kb on + strand, within RR42_RS01075 at 252.595 kb on - strand, within RR42_RS01075 at 252.627 kb on + strand, within RR42_RS01075 at 252.627 kb on + strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.795 kb on + strand, within RR42_RS01075 at 252.796 kb on - strand, within RR42_RS01075 at 252.853 kb on + strand, within RR42_RS01075 at 252.853 kb on + strand, within RR42_RS01075 at 252.854 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 253.034 kb on + strand at 253.034 kb on + strand at 253.034 kb on + strand at 253.035 kb on - strand at 253.035 kb on - strand at 253.062 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.072 kb on - strand at 253.072 kb on - strand at 253.158 kb on + strand at 253.159 kb on - strand at 253.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 251,153 + RR42_RS01065 0.66 +0.6 251,153 + RR42_RS01065 0.66 +0.3 251,154 - RR42_RS01065 0.66 +0.1 251,154 - RR42_RS01065 0.66 +1.1 251,154 - RR42_RS01065 0.66 -1.0 251,336 + RR42_RS01065 0.80 +0.2 251,336 + RR42_RS01065 0.80 -0.4 251,337 - RR42_RS01065 0.80 -0.6 251,337 - RR42_RS01065 0.80 -0.7 251,459 + RR42_RS01065 0.89 +0.4 251,459 + RR42_RS01065 0.89 -0.1 251,459 + RR42_RS01065 0.89 -0.9 251,460 - RR42_RS01065 0.89 -0.1 251,460 - RR42_RS01065 0.89 +0.2 251,543 + -0.4 251,543 + -1.7 251,544 - +1.8 251,594 + +1.5 251,594 + +0.6 251,603 + -0.0 251,603 + -0.3 251,833 + RR42_RS01070 0.29 -0.1 251,833 + RR42_RS01070 0.29 -0.6 251,834 - RR42_RS01070 0.29 +0.1 251,962 + RR42_RS01070 0.54 +0.5 251,962 + RR42_RS01070 0.54 -0.4 251,962 + RR42_RS01070 0.54 -0.4 251,963 - RR42_RS01070 0.54 +0.1 252,115 + RR42_RS01070 0.84 -0.2 252,115 + RR42_RS01070 0.84 -0.1 252,115 + RR42_RS01070 0.84 -0.7 252,266 - -0.4 252,393 - +1.1 252,393 - +1.5 252,399 + -0.5 252,399 + -1.0 252,400 - +1.2 252,403 + -0.3 252,403 + -0.9 252,403 + -1.2 252,403 + +0.2 252,403 + -0.2 252,403 + -0.3 252,403 + -0.6 252,403 + -0.2 252,403 + -0.3 252,404 - +0.2 252,404 - +0.3 252,404 - -1.8 252,404 - +0.2 252,404 - +0.1 252,404 - -0.3 252,404 - -1.9 252,404 - +0.2 252,594 + RR42_RS01075 0.18 -0.9 252,595 - RR42_RS01075 0.18 +0.6 252,627 + RR42_RS01075 0.23 -0.1 252,627 + RR42_RS01075 0.23 +0.6 252,628 - RR42_RS01075 0.23 -0.5 252,628 - RR42_RS01075 0.23 -0.1 252,628 - RR42_RS01075 0.23 -0.8 252,628 - RR42_RS01075 0.23 +1.8 252,795 + RR42_RS01075 0.52 -1.5 252,796 - RR42_RS01075 0.52 -0.8 252,853 + RR42_RS01075 0.62 +0.5 252,853 + RR42_RS01075 0.62 -2.1 252,854 - RR42_RS01075 0.62 +0.7 252,985 - RR42_RS01075 0.85 +0.3 252,985 - RR42_RS01075 0.85 +1.1 252,985 - RR42_RS01075 0.85 +0.5 253,034 + +0.1 253,034 + -2.2 253,034 + +0.7 253,035 - +0.2 253,035 - +0.8 253,062 + -0.2 253,071 + -1.1 253,071 + +0.5 253,071 + -0.5 253,071 + -0.5 253,071 + -0.4 253,072 - -0.5 253,072 - -0.2 253,158 + +1.0 253,159 - -0.4 253,172 - -0.4
Or see this region's nucleotide sequence