Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6024

Experiment: Cobalt chloride 0.3125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_6023 and Pf1N1B4_6024 are separated by 374 nucleotidesPf1N1B4_6024 and Pf1N1B4_6025 are separated by 290 nucleotidesPf1N1B4_6025 and Pf1N1B4_6026 are separated by 72 nucleotides Pf1N1B4_6023 - Threonyl-tRNA synthetase (EC 6.1.1.3), at 489,159 to 491,081 _6023 Pf1N1B4_6024 - FIG00953292: hypothetical protein, at 491,456 to 491,758 _6024 Pf1N1B4_6025 - Cold shock protein CspG, at 492,049 to 492,261 _6025 Pf1N1B4_6026 - lipoprotein, putative, at 492,334 to 492,651 _6026 Position (kb) 491 492Strain fitness (log2 ratio) -2 -1 0 1 2at 491.422 kb on + strandat 491.423 kb on - strandat 491.472 kb on + strandat 491.472 kb on + strandat 491.552 kb on + strand, within Pf1N1B4_6024at 491.552 kb on + strand, within Pf1N1B4_6024at 491.552 kb on + strand, within Pf1N1B4_6024at 491.552 kb on + strand, within Pf1N1B4_6024at 491.552 kb on + strand, within Pf1N1B4_6024at 491.552 kb on + strandat 491.553 kb on - strand, within Pf1N1B4_6024at 491.808 kb on + strandat 491.828 kb on - strandat 491.974 kb on + strandat 491.975 kb on - strandat 491.980 kb on - strandat 492.014 kb on + strandat 492.014 kb on + strandat 492.015 kb on - strandat 492.017 kb on + strandat 492.017 kb on + strandat 492.026 kb on + strandat 492.026 kb on + strandat 492.026 kb on + strandat 492.026 kb on + strandat 492.026 kb on + strandat 492.026 kb on + strandat 492.027 kb on - strandat 492.027 kb on - strandat 492.028 kb on + strandat 492.029 kb on - strandat 492.043 kb on + strandat 492.043 kb on + strandat 492.044 kb on - strandat 492.075 kb on + strandat 492.076 kb on - strand, within Pf1N1B4_6025at 492.143 kb on + strand, within Pf1N1B4_6025at 492.143 kb on + strand, within Pf1N1B4_6025at 492.156 kb on + strand, within Pf1N1B4_6025at 492.259 kb on + strandat 492.260 kb on - strandat 492.586 kb on - strand, within Pf1N1B4_6026at 492.586 kb on - strand, within Pf1N1B4_6026at 492.586 kb on - strand, within Pf1N1B4_6026at 492.671 kb on - strandat 492.674 kb on + strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM
remove
491,422 + -0.1
491,423 - -1.4
491,472 + +0.4
491,472 + +0.2
491,552 + Pf1N1B4_6024 0.32 -0.1
491,552 + Pf1N1B4_6024 0.32 -1.7
491,552 + Pf1N1B4_6024 0.32 -0.5
491,552 + Pf1N1B4_6024 0.32 -1.1
491,552 + Pf1N1B4_6024 0.32 -1.4
491,552 + +0.3
491,553 - Pf1N1B4_6024 0.32 -0.9
491,808 + +0.9
491,828 - -1.2
491,974 + +0.1
491,975 - -2.7
491,980 - -1.9
492,014 + -1.1
492,014 + +0.0
492,015 - -0.8
492,017 + -1.7
492,017 + +0.2
492,026 + -1.7
492,026 + +1.4
492,026 + -0.1
492,026 + -1.7
492,026 + -1.3
492,026 + -0.4
492,027 - +0.0
492,027 - -1.1
492,028 + -0.7
492,029 - +0.9
492,043 + -0.3
492,043 + -0.7
492,044 - -1.5
492,075 + -0.7
492,076 - Pf1N1B4_6025 0.13 -0.1
492,143 + Pf1N1B4_6025 0.44 -1.7
492,143 + Pf1N1B4_6025 0.44 +0.3
492,156 + Pf1N1B4_6025 0.50 -0.7
492,259 + -1.0
492,260 - -1.4
492,586 - Pf1N1B4_6026 0.79 -0.7
492,586 - Pf1N1B4_6026 0.79 -0.1
492,586 - Pf1N1B4_6026 0.79 +1.9
492,671 - +0.2
492,674 + +0.3
492,675 - -1.7
492,675 - -0.5
492,675 - +0.9
492,675 - -1.7
492,675 - -0.8
492,675 - +0.5
492,675 - -0.7
492,675 - -0.9
492,675 - +0.1
492,675 - +1.5
492,675 - +0.2

Or see this region's nucleotide sequence