Experiment: Cobalt chloride 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4629 and Pf1N1B4_4630 overlap by 4 nucleotides Pf1N1B4_4630 and Pf1N1B4_4631 are separated by 118 nucleotides Pf1N1B4_4631 and Pf1N1B4_4632 are separated by 108 nucleotides Pf1N1B4_4632 and Pf1N1B4_4633 overlap by 4 nucleotides
Pf1N1B4_4629 - hypothetical protein, at 5,104,642 to 5,104,854
_4629
Pf1N1B4_4630 - hypothetical protein, at 5,104,851 to 5,105,108
_4630
Pf1N1B4_4631 - Glutathione S-transferase family protein, at 5,105,227 to 5,105,703
_4631
Pf1N1B4_4632 - Exonuclease SbcC, at 5,105,812 to 5,109,453
_4632
Pf1N1B4_4633 - Exonuclease SbcD, at 5,109,450 to 5,110,706
_4633
Position (kb)
5105
5106
5107
5108
5109
5110 Strain fitness (log2 ratio)
-2
-1
0
1 at 5105.170 kb on - strand at 5105.170 kb on - strand at 5105.170 kb on - strand at 5105.170 kb on - strand at 5105.170 kb on - strand at 5105.170 kb on - strand at 5105.173 kb on + strand at 5105.240 kb on - strand at 5105.297 kb on + strand, within Pf1N1B4_4631 at 5105.298 kb on - strand, within Pf1N1B4_4631 at 5105.493 kb on - strand, within Pf1N1B4_4631 at 5106.237 kb on - strand, within Pf1N1B4_4632 at 5106.237 kb on - strand, within Pf1N1B4_4632 at 5106.968 kb on + strand, within Pf1N1B4_4632 at 5107.982 kb on + strand, within Pf1N1B4_4632 at 5108.864 kb on + strand, within Pf1N1B4_4632 at 5108.864 kb on + strand, within Pf1N1B4_4632 at 5108.865 kb on - strand, within Pf1N1B4_4632 at 5109.173 kb on + strand at 5109.474 kb on + strand at 5109.474 kb on + strand at 5109.533 kb on - strand at 5110.028 kb on - strand, within Pf1N1B4_4633 at 5110.222 kb on + strand, within Pf1N1B4_4633 at 5110.222 kb on + strand, within Pf1N1B4_4633 at 5110.223 kb on - strand, within Pf1N1B4_4633 at 5110.227 kb on - strand, within Pf1N1B4_4633
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM remove 5,105,170 - +0.3 5,105,170 - +0.5 5,105,170 - +0.4 5,105,170 - -0.3 5,105,170 - +0.4 5,105,170 - +0.9 5,105,173 + +0.4 5,105,240 - +0.9 5,105,297 + Pf1N1B4_4631 0.15 -0.7 5,105,298 - Pf1N1B4_4631 0.15 +0.3 5,105,493 - Pf1N1B4_4631 0.56 -1.8 5,106,237 - Pf1N1B4_4632 0.12 -1.4 5,106,237 - Pf1N1B4_4632 0.12 -1.1 5,106,968 + Pf1N1B4_4632 0.32 -0.3 5,107,982 + Pf1N1B4_4632 0.60 -0.5 5,108,864 + Pf1N1B4_4632 0.84 -0.4 5,108,864 + Pf1N1B4_4632 0.84 -1.5 5,108,865 - Pf1N1B4_4632 0.84 +0.4 5,109,173 + -0.1 5,109,474 + -1.3 5,109,474 + -1.7 5,109,533 - -1.1 5,110,028 - Pf1N1B4_4633 0.46 +1.3 5,110,222 + Pf1N1B4_4633 0.61 +1.3 5,110,222 + Pf1N1B4_4633 0.61 -0.1 5,110,223 - Pf1N1B4_4633 0.61 +0.7 5,110,227 - Pf1N1B4_4633 0.62 +0.9
Or see this region's nucleotide sequence