Experiment: Cobalt chloride 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_369 and Pf1N1B4_370 are separated by 201 nucleotides Pf1N1B4_370 and Pf1N1B4_371 are separated by 145 nucleotides Pf1N1B4_371 and Pf1N1B4_372 are separated by 105 nucleotides
Pf1N1B4_369 - membrane protein, putative, at 436,836 to 437,798
_369
Pf1N1B4_370 - hypothetical protein, at 438,000 to 438,194
_370
Pf1N1B4_371 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 438,340 to 439,572
_371
Pf1N1B4_372 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 439,678 to 441,201
_372
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2 at 437.524 kb on - strand at 437.524 kb on - strand, within Pf1N1B4_369 at 437.524 kb on - strand, within Pf1N1B4_369 at 437.527 kb on + strand, within Pf1N1B4_369 at 437.528 kb on - strand, within Pf1N1B4_369 at 437.528 kb on - strand, within Pf1N1B4_369 at 437.536 kb on + strand, within Pf1N1B4_369 at 437.536 kb on + strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.537 kb on - strand, within Pf1N1B4_369 at 437.633 kb on - strand, within Pf1N1B4_369 at 437.633 kb on - strand, within Pf1N1B4_369 at 437.770 kb on + strand at 437.771 kb on - strand at 437.771 kb on - strand at 437.771 kb on - strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.792 kb on + strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.793 kb on - strand at 437.836 kb on - strand at 437.836 kb on - strand at 437.836 kb on - strand at 437.907 kb on + strand at 437.907 kb on + strand at 437.907 kb on + strand at 437.919 kb on + strand at 437.920 kb on - strand at 437.963 kb on + strand at 437.963 kb on + strand at 437.964 kb on - strand at 437.964 kb on - strand at 437.964 kb on - strand at 437.964 kb on - strand at 437.964 kb on - strand at 438.003 kb on + strand at 438.003 kb on + strand at 438.003 kb on + strand at 438.004 kb on - strand at 438.004 kb on - strand at 438.004 kb on - strand at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.081 kb on + strand, within Pf1N1B4_370 at 438.082 kb on - strand, within Pf1N1B4_370 at 438.082 kb on - strand, within Pf1N1B4_370 at 438.082 kb on - strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.156 kb on + strand, within Pf1N1B4_370 at 438.157 kb on - strand, within Pf1N1B4_370 at 438.157 kb on - strand, within Pf1N1B4_370 at 438.158 kb on + strand, within Pf1N1B4_370 at 438.192 kb on + strand at 438.192 kb on + strand at 438.193 kb on - strand at 438.252 kb on + strand at 438.269 kb on - strand at 438.269 kb on - strand at 438.272 kb on + strand at 438.272 kb on + strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.273 kb on - strand at 438.326 kb on - strand at 438.341 kb on + strand at 438.342 kb on - strand at 438.342 kb on - strand at 438.345 kb on + strand at 438.346 kb on - strand at 438.346 kb on - strand at 438.346 kb on - strand at 438.386 kb on + strand at 438.386 kb on + strand at 438.386 kb on + strand at 438.387 kb on - strand at 438.387 kb on - strand at 438.387 kb on - strand at 438.387 kb on - strand at 438.391 kb on - strand at 438.416 kb on - strand at 438.416 kb on - strand at 438.560 kb on + strand, within Pf1N1B4_371 at 438.560 kb on + strand, within Pf1N1B4_371 at 438.560 kb on + strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand at 438.561 kb on - strand, within Pf1N1B4_371 at 438.561 kb on - strand, within Pf1N1B4_371 at 438.597 kb on - strand, within Pf1N1B4_371 at 438.983 kb on + strand at 438.983 kb on + strand, within Pf1N1B4_371 at 438.984 kb on - strand at 439.068 kb on - strand, within Pf1N1B4_371 at 439.068 kb on - strand, within Pf1N1B4_371 at 439.068 kb on - strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand, within Pf1N1B4_371 at 439.139 kb on + strand at 439.139 kb on + strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.140 kb on - strand, within Pf1N1B4_371 at 439.577 kb on + strand at 439.577 kb on + strand at 439.577 kb on + strand at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.618 kb on + strand at 439.619 kb on - strand at 439.619 kb on - strand at 439.619 kb on - strand at 439.619 kb on - strand at 439.629 kb on + strand at 439.630 kb on - strand at 439.816 kb on + strand at 439.817 kb on - strand at 440.171 kb on + strand, within Pf1N1B4_372 at 440.223 kb on - strand, within Pf1N1B4_372 at 440.381 kb on + strand, within Pf1N1B4_372 at 440.382 kb on - strand, within Pf1N1B4_372 at 440.547 kb on + strand, within Pf1N1B4_372 at 440.549 kb on + strand, within Pf1N1B4_372 at 440.550 kb on - strand, within Pf1N1B4_372
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM remove 437,524 - +1.2 437,524 - Pf1N1B4_369 0.71 -0.1 437,524 - Pf1N1B4_369 0.71 -0.3 437,527 + Pf1N1B4_369 0.72 -0.2 437,528 - Pf1N1B4_369 0.72 +0.0 437,528 - Pf1N1B4_369 0.72 +0.6 437,536 + Pf1N1B4_369 0.73 +0.4 437,536 + Pf1N1B4_369 0.73 +0.7 437,537 - Pf1N1B4_369 0.73 -2.0 437,537 - Pf1N1B4_369 0.73 +1.2 437,537 - Pf1N1B4_369 0.73 +0.2 437,537 - Pf1N1B4_369 0.73 +0.2 437,537 - Pf1N1B4_369 0.73 -0.8 437,537 - Pf1N1B4_369 0.73 -0.2 437,633 - Pf1N1B4_369 0.83 -1.1 437,633 - Pf1N1B4_369 0.83 -0.2 437,770 + -2.0 437,771 - -0.1 437,771 - -2.0 437,771 - -2.1 437,792 + -0.4 437,792 + +1.2 437,792 + -1.8 437,792 + +0.7 437,792 + +0.6 437,793 - +0.5 437,793 - -0.2 437,793 - -0.4 437,793 - -1.1 437,793 - +1.9 437,793 - +0.8 437,793 - -1.8 437,793 - +1.2 437,793 - +0.0 437,793 - +1.6 437,836 - -2.0 437,836 - -0.4 437,836 - -1.6 437,907 + -1.0 437,907 + +0.9 437,907 + -0.4 437,919 + +0.2 437,920 - +1.2 437,963 + -0.3 437,963 + -0.4 437,964 - -1.8 437,964 - -2.0 437,964 - +0.2 437,964 - +0.2 437,964 - +0.8 438,003 + -0.4 438,003 + -0.4 438,003 + -0.8 438,004 - +0.7 438,004 - -1.3 438,004 - -0.6 438,081 + Pf1N1B4_370 0.42 -0.1 438,081 + Pf1N1B4_370 0.42 +0.2 438,081 + Pf1N1B4_370 0.42 -0.8 438,081 + Pf1N1B4_370 0.42 +0.7 438,081 + Pf1N1B4_370 0.42 +0.5 438,081 + Pf1N1B4_370 0.42 +0.2 438,081 + Pf1N1B4_370 0.42 +0.2 438,081 + Pf1N1B4_370 0.42 -0.6 438,082 - Pf1N1B4_370 0.42 -0.4 438,082 - Pf1N1B4_370 0.42 -2.0 438,082 - Pf1N1B4_370 0.42 -0.1 438,156 + Pf1N1B4_370 0.80 -0.0 438,156 + Pf1N1B4_370 0.80 +0.6 438,156 + Pf1N1B4_370 0.80 +0.4 438,156 + Pf1N1B4_370 0.80 -0.4 438,156 + Pf1N1B4_370 0.80 +0.4 438,156 + Pf1N1B4_370 0.80 -1.6 438,157 - Pf1N1B4_370 0.81 -0.5 438,157 - Pf1N1B4_370 0.81 +0.7 438,158 + Pf1N1B4_370 0.81 -2.5 438,192 + -0.8 438,192 + +1.5 438,193 - +0.1 438,252 + -1.0 438,269 - -0.1 438,269 - +2.0 438,272 + +0.1 438,272 + -0.0 438,273 - +0.5 438,273 - -0.3 438,273 - +2.2 438,273 - -0.2 438,273 - +0.7 438,273 - +0.4 438,273 - -0.8 438,326 - -2.0 438,341 + +0.9 438,342 - +1.8 438,342 - -0.6 438,345 + -1.0 438,346 - -0.0 438,346 - -2.1 438,346 - -0.4 438,386 + +1.8 438,386 + +0.0 438,386 + +0.5 438,387 - -0.4 438,387 - -0.4 438,387 - +1.1 438,387 - -1.0 438,391 - -2.1 438,416 - -1.1 438,416 - +0.9 438,560 + Pf1N1B4_371 0.18 -0.9 438,560 + Pf1N1B4_371 0.18 +0.5 438,560 + Pf1N1B4_371 0.18 -1.8 438,561 - Pf1N1B4_371 0.18 -0.7 438,561 - Pf1N1B4_371 0.18 -2.1 438,561 - Pf1N1B4_371 0.18 +1.7 438,561 - +1.2 438,561 - Pf1N1B4_371 0.18 -1.6 438,561 - Pf1N1B4_371 0.18 -0.6 438,597 - Pf1N1B4_371 0.21 -0.5 438,983 + -0.4 438,983 + Pf1N1B4_371 0.52 +0.7 438,984 - -0.8 439,068 - Pf1N1B4_371 0.59 -0.6 439,068 - Pf1N1B4_371 0.59 +1.4 439,068 - Pf1N1B4_371 0.59 +0.8 439,139 + Pf1N1B4_371 0.65 -0.2 439,139 + Pf1N1B4_371 0.65 -0.6 439,139 + Pf1N1B4_371 0.65 -0.4 439,139 + Pf1N1B4_371 0.65 +0.4 439,139 + Pf1N1B4_371 0.65 -0.2 439,139 + Pf1N1B4_371 0.65 +0.2 439,139 + -1.6 439,139 + Pf1N1B4_371 0.65 -1.3 439,140 - Pf1N1B4_371 0.65 +0.0 439,140 - Pf1N1B4_371 0.65 -0.4 439,140 - Pf1N1B4_371 0.65 -2.0 439,140 - Pf1N1B4_371 0.65 +0.7 439,140 - Pf1N1B4_371 0.65 -0.8 439,140 - Pf1N1B4_371 0.65 +0.2 439,577 + -0.1 439,577 + +1.5 439,577 + +0.5 439,577 + -0.4 439,578 - +0.6 439,578 - +0.2 439,578 - +0.2 439,578 - -1.1 439,618 + -1.0 439,619 - -0.8 439,619 - +0.2 439,619 - +0.8 439,619 - +0.4 439,629 + -1.8 439,630 - +0.2 439,816 + +0.2 439,817 - -1.5 440,171 + Pf1N1B4_372 0.32 -0.8 440,223 - Pf1N1B4_372 0.36 +0.5 440,381 + Pf1N1B4_372 0.46 -0.4 440,382 - Pf1N1B4_372 0.46 +1.2 440,547 + Pf1N1B4_372 0.57 -0.6 440,549 + Pf1N1B4_372 0.57 -0.4 440,550 - Pf1N1B4_372 0.57 +0.2
Or see this region's nucleotide sequence