Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2966

Experiment: Cobalt chloride 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2965 and Pf1N1B4_2966 are separated by 313 nucleotidesPf1N1B4_2966 and Pf1N1B4_2967 are separated by 145 nucleotidesPf1N1B4_2967 and Pf1N1B4_2968 are separated by 24 nucleotides Pf1N1B4_2965 - hypothetical protein, at 3,326,471 to 3,327,412 _2965 Pf1N1B4_2966 - FIG00958649: hypothetical protein, at 3,327,726 to 3,328,160 _2966 Pf1N1B4_2967 - Alpha/beta hydrolase, at 3,328,306 to 3,328,938 _2967 Pf1N1B4_2968 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 3,328,963 to 3,330,318 _2968 Position (kb) 3327 3328 3329Strain fitness (log2 ratio) -2 -1 0 1 2at 3327.612 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.727 kb on + strandat 3327.727 kb on + strandat 3327.728 kb on - strandat 3328.009 kb on + strand, within Pf1N1B4_2966at 3328.174 kb on - strandat 3328.174 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.216 kb on + strandat 3328.217 kb on - strandat 3328.217 kb on - strandat 3328.219 kb on - strandat 3328.238 kb on - strandat 3328.238 kb on - strandat 3328.260 kb on + strandat 3328.323 kb on - strandat 3328.323 kb on - strandat 3328.360 kb on + strandat 3328.360 kb on + strandat 3328.361 kb on - strandat 3328.488 kb on + strand, within Pf1N1B4_2967at 3328.489 kb on - strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.761 kb on + strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.762 kb on - strand, within Pf1N1B4_2967at 3328.816 kb on + strand, within Pf1N1B4_2967at 3328.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM
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3,327,612 + -0.5
3,327,617 + +0.2
3,327,617 + +0.2
3,327,617 + +0.9
3,327,617 + +0.5
3,327,617 + -0.5
3,327,617 + -0.5
3,327,617 + +2.0
3,327,617 + -1.4
3,327,617 + +1.0
3,327,617 + +0.5
3,327,727 + -0.7
3,327,727 + -0.1
3,327,728 - -0.5
3,328,009 + Pf1N1B4_2966 0.65 +2.5
3,328,174 - +1.0
3,328,174 - +1.1
3,328,191 - -0.1
3,328,191 - +1.8
3,328,191 - -0.0
3,328,191 - -0.1
3,328,191 - -1.1
3,328,191 - -0.5
3,328,216 + +0.5
3,328,217 - -0.1
3,328,217 - +1.1
3,328,219 - +0.5
3,328,238 - -1.2
3,328,238 - -0.3
3,328,260 + -0.7
3,328,323 - -1.8
3,328,323 - -1.3
3,328,360 + +0.1
3,328,360 + +2.5
3,328,361 - +1.9
3,328,488 + Pf1N1B4_2967 0.29 +0.7
3,328,489 - Pf1N1B4_2967 0.29 -0.5
3,328,761 + Pf1N1B4_2967 0.72 -0.1
3,328,761 + Pf1N1B4_2967 0.72 -1.1
3,328,761 + Pf1N1B4_2967 0.72 -0.7
3,328,761 + Pf1N1B4_2967 0.72 -0.1
3,328,761 + Pf1N1B4_2967 0.72 -1.1
3,328,761 + Pf1N1B4_2967 0.72 +0.4
3,328,761 + Pf1N1B4_2967 0.72 -0.6
3,328,761 + Pf1N1B4_2967 0.72 -1.7
3,328,762 - Pf1N1B4_2967 0.72 -0.0
3,328,762 - Pf1N1B4_2967 0.72 -1.1
3,328,762 - Pf1N1B4_2967 0.72 +0.0
3,328,762 - Pf1N1B4_2967 0.72 -0.3
3,328,762 - Pf1N1B4_2967 0.72 +0.4
3,328,762 - Pf1N1B4_2967 0.72 +0.2
3,328,762 - Pf1N1B4_2967 0.72 -0.3
3,328,762 - Pf1N1B4_2967 0.72 +1.0
3,328,762 - Pf1N1B4_2967 0.72 +1.5
3,328,762 - Pf1N1B4_2967 0.72 +1.8
3,328,762 - Pf1N1B4_2967 0.72 -0.4
3,328,816 + Pf1N1B4_2967 0.81 -0.1
3,328,816 + +1.2

Or see this region's nucleotide sequence