Experiment: Cobalt chloride 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2066 and Pf1N1B4_2067 are separated by 75 nucleotides Pf1N1B4_2067 and Pf1N1B4_2068 are separated by 15 nucleotides
Pf1N1B4_2066 - Uncharacterized protein ImpI/VasC, at 2,358,412 to 2,359,818
_2066
Pf1N1B4_2067 - Type VI secretion lipoprotein/VasD, at 2,359,894 to 2,360,406
_2067
Pf1N1B4_2068 - Uncharacterized protein ImpJ/VasE, at 2,360,422 to 2,361,756
_2068
Position (kb)
2359
2360
2361 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2359.105 kb on - strand, within Pf1N1B4_2066 at 2359.127 kb on + strand, within Pf1N1B4_2066 at 2359.142 kb on + strand, within Pf1N1B4_2066 at 2359.690 kb on + strand at 2359.714 kb on + strand at 2359.722 kb on + strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.723 kb on - strand at 2359.784 kb on - strand at 2359.797 kb on + strand at 2359.797 kb on + strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.798 kb on - strand at 2359.833 kb on + strand at 2359.834 kb on - strand at 2359.834 kb on - strand at 2359.846 kb on - strand at 2359.846 kb on - strand at 2360.082 kb on + strand, within Pf1N1B4_2067 at 2360.083 kb on - strand, within Pf1N1B4_2067 at 2360.126 kb on - strand, within Pf1N1B4_2067 at 2360.327 kb on - strand, within Pf1N1B4_2067 at 2360.327 kb on - strand, within Pf1N1B4_2067 at 2360.405 kb on - strand at 2360.498 kb on - strand at 2360.716 kb on + strand, within Pf1N1B4_2068 at 2360.716 kb on + strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.755 kb on - strand, within Pf1N1B4_2068 at 2360.792 kb on - strand, within Pf1N1B4_2068 at 2360.792 kb on - strand, within Pf1N1B4_2068 at 2360.977 kb on + strand at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.977 kb on + strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2360.978 kb on - strand, within Pf1N1B4_2068 at 2361.208 kb on + strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.209 kb on - strand, within Pf1N1B4_2068 at 2361.250 kb on - strand, within Pf1N1B4_2068 at 2361.250 kb on - strand, within Pf1N1B4_2068 at 2361.278 kb on - strand, within Pf1N1B4_2068 at 2361.400 kb on + strand, within Pf1N1B4_2068 at 2361.400 kb on + strand, within Pf1N1B4_2068 at 2361.401 kb on - strand, within Pf1N1B4_2068
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM remove 2,359,105 - Pf1N1B4_2066 0.49 -0.9 2,359,127 + Pf1N1B4_2066 0.51 -1.5 2,359,142 + Pf1N1B4_2066 0.52 -0.4 2,359,690 + +0.6 2,359,714 + +0.0 2,359,722 + -0.6 2,359,723 - -0.9 2,359,723 - +0.1 2,359,723 - +0.4 2,359,723 - +0.8 2,359,723 - -0.0 2,359,723 - -0.8 2,359,784 - +1.2 2,359,797 + +1.2 2,359,797 + -0.5 2,359,798 - -0.2 2,359,798 - +1.9 2,359,798 - +0.8 2,359,798 - -0.5 2,359,798 - -0.9 2,359,798 - +0.8 2,359,798 - -0.2 2,359,798 - -0.7 2,359,798 - -0.2 2,359,833 + +0.8 2,359,834 - -0.0 2,359,834 - +0.8 2,359,846 - -1.2 2,359,846 - +0.9 2,360,082 + Pf1N1B4_2067 0.37 -0.4 2,360,083 - Pf1N1B4_2067 0.37 -0.8 2,360,126 - Pf1N1B4_2067 0.45 -0.7 2,360,327 - Pf1N1B4_2067 0.84 -0.4 2,360,327 - Pf1N1B4_2067 0.84 -0.9 2,360,405 - -0.0 2,360,498 - -0.4 2,360,716 + Pf1N1B4_2068 0.22 -1.9 2,360,716 + Pf1N1B4_2068 0.22 -2.0 2,360,755 - Pf1N1B4_2068 0.25 +1.1 2,360,755 - Pf1N1B4_2068 0.25 -1.9 2,360,755 - Pf1N1B4_2068 0.25 +0.3 2,360,755 - Pf1N1B4_2068 0.25 +0.6 2,360,792 - Pf1N1B4_2068 0.28 +0.0 2,360,792 - Pf1N1B4_2068 0.28 -0.6 2,360,977 + -0.5 2,360,977 + Pf1N1B4_2068 0.42 +1.8 2,360,977 + Pf1N1B4_2068 0.42 +0.6 2,360,977 + Pf1N1B4_2068 0.42 +1.0 2,360,977 + Pf1N1B4_2068 0.42 -0.2 2,360,977 + Pf1N1B4_2068 0.42 -0.8 2,360,977 + Pf1N1B4_2068 0.42 +0.7 2,360,977 + Pf1N1B4_2068 0.42 -0.5 2,360,978 - Pf1N1B4_2068 0.42 +0.3 2,360,978 - Pf1N1B4_2068 0.42 -1.2 2,360,978 - Pf1N1B4_2068 0.42 -1.0 2,360,978 - Pf1N1B4_2068 0.42 +0.5 2,360,978 - Pf1N1B4_2068 0.42 -1.5 2,360,978 - Pf1N1B4_2068 0.42 +1.8 2,360,978 - Pf1N1B4_2068 0.42 +0.9 2,360,978 - Pf1N1B4_2068 0.42 +0.8 2,360,978 - Pf1N1B4_2068 0.42 -1.3 2,360,978 - Pf1N1B4_2068 0.42 +0.4 2,360,978 - Pf1N1B4_2068 0.42 +0.2 2,361,208 + Pf1N1B4_2068 0.59 -1.0 2,361,209 - Pf1N1B4_2068 0.59 -1.5 2,361,209 - Pf1N1B4_2068 0.59 +0.3 2,361,209 - Pf1N1B4_2068 0.59 -0.9 2,361,250 - Pf1N1B4_2068 0.62 -0.9 2,361,250 - Pf1N1B4_2068 0.62 +0.6 2,361,278 - Pf1N1B4_2068 0.64 +1.2 2,361,400 + Pf1N1B4_2068 0.73 -0.9 2,361,400 + Pf1N1B4_2068 0.73 +1.8 2,361,401 - Pf1N1B4_2068 0.73 -1.1
Or see this region's nucleotide sequence