Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1873

Experiment: Cobalt chloride 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1872 and Pf1N1B4_1873 are separated by 118 nucleotidesPf1N1B4_1873 and Pf1N1B4_1874 are separated by 59 nucleotidesPf1N1B4_1874 and Pf1N1B4_1875 are separated by 74 nucleotides Pf1N1B4_1872 - Zinc ABC transporter, periplasmic-binding protein ZnuA, at 2,141,599 to 2,142,528 _1872 Pf1N1B4_1873 - Homoserine kinase (EC 2.7.1.39), at 2,142,647 to 2,143,597 _1873 Pf1N1B4_1874 - FIG00953549: hypothetical protein, at 2,143,657 to 2,143,944 _1874 Pf1N1B4_1875 - DNA polymerase I (EC 2.7.7.7), at 2,144,019 to 2,146,787 _1875 Position (kb) 2142 2143 2144Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2141.741 kb on + strand, within Pf1N1B4_1872at 2141.784 kb on + strand, within Pf1N1B4_1872at 2141.785 kb on - strand, within Pf1N1B4_1872at 2141.785 kb on - strand, within Pf1N1B4_1872at 2141.785 kb on - strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.788 kb on + strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.789 kb on - strand, within Pf1N1B4_1872at 2141.810 kb on + strand, within Pf1N1B4_1872at 2141.810 kb on + strand, within Pf1N1B4_1872at 2141.810 kb on + strand, within Pf1N1B4_1872at 2141.810 kb on + strand, within Pf1N1B4_1872at 2141.811 kb on - strand, within Pf1N1B4_1872at 2141.811 kb on - strand, within Pf1N1B4_1872at 2141.892 kb on + strand, within Pf1N1B4_1872at 2141.893 kb on - strand, within Pf1N1B4_1872at 2142.155 kb on + strand, within Pf1N1B4_1872at 2142.155 kb on + strand, within Pf1N1B4_1872at 2142.202 kb on + strandat 2142.202 kb on + strand, within Pf1N1B4_1872at 2142.202 kb on + strand, within Pf1N1B4_1872at 2142.202 kb on + strand, within Pf1N1B4_1872at 2142.202 kb on + strand, within Pf1N1B4_1872at 2142.203 kb on - strand, within Pf1N1B4_1872at 2142.203 kb on - strand, within Pf1N1B4_1872at 2142.229 kb on + strand, within Pf1N1B4_1872at 2142.266 kb on + strand, within Pf1N1B4_1872at 2142.267 kb on - strand, within Pf1N1B4_1872at 2142.287 kb on + strand, within Pf1N1B4_1872at 2142.287 kb on + strand, within Pf1N1B4_1872at 2142.287 kb on + strand, within Pf1N1B4_1872at 2142.287 kb on + strandat 2142.470 kb on - strandat 2142.470 kb on - strandat 2142.526 kb on + strandat 2142.526 kb on + strandat 2142.526 kb on + strandat 2142.526 kb on + strandat 2142.526 kb on + strandat 2142.527 kb on - strandat 2142.527 kb on - strandat 2142.527 kb on - strandat 2142.527 kb on - strandat 2142.527 kb on - strandat 2142.585 kb on - strandat 2142.585 kb on - strandat 2142.600 kb on + strandat 2142.600 kb on + strandat 2142.600 kb on + strandat 2142.600 kb on + strandat 2142.601 kb on - strandat 2142.648 kb on + strandat 2142.649 kb on - strandat 2142.649 kb on - strandat 2143.643 kb on - strandat 2143.643 kb on - strandat 2143.648 kb on - strandat 2143.648 kb on - strandat 2143.648 kb on - strandat 2143.648 kb on - strandat 2143.648 kb on - strandat 2143.659 kb on - strandat 2143.670 kb on - strandat 2143.752 kb on - strand, within Pf1N1B4_1874at 2143.752 kb on - strand, within Pf1N1B4_1874at 2143.752 kb on - strand, within Pf1N1B4_1874at 2143.752 kb on - strandat 2143.788 kb on - strand, within Pf1N1B4_1874at 2143.846 kb on + strand, within Pf1N1B4_1874at 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.847 kb on - strandat 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.847 kb on - strand, within Pf1N1B4_1874at 2143.933 kb on + strandat 2143.934 kb on - strandat 2143.947 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM
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2,141,741 + Pf1N1B4_1872 0.15 -0.5
2,141,784 + Pf1N1B4_1872 0.20 -0.2
2,141,785 - Pf1N1B4_1872 0.20 -3.1
2,141,785 - Pf1N1B4_1872 0.20 -0.2
2,141,785 - Pf1N1B4_1872 0.20 +0.0
2,141,788 + Pf1N1B4_1872 0.20 -0.2
2,141,788 + Pf1N1B4_1872 0.20 +1.2
2,141,788 + Pf1N1B4_1872 0.20 -1.6
2,141,788 + Pf1N1B4_1872 0.20 -0.4
2,141,788 + Pf1N1B4_1872 0.20 +0.9
2,141,788 + Pf1N1B4_1872 0.20 +0.6
2,141,788 + Pf1N1B4_1872 0.20 -0.6
2,141,788 + Pf1N1B4_1872 0.20 +0.1
2,141,788 + Pf1N1B4_1872 0.20 +0.9
2,141,789 - Pf1N1B4_1872 0.20 +1.2
2,141,789 - Pf1N1B4_1872 0.20 -1.2
2,141,789 - Pf1N1B4_1872 0.20 +0.5
2,141,789 - Pf1N1B4_1872 0.20 -0.5
2,141,789 - Pf1N1B4_1872 0.20 +0.0
2,141,789 - Pf1N1B4_1872 0.20 -0.9
2,141,789 - Pf1N1B4_1872 0.20 +0.1
2,141,789 - Pf1N1B4_1872 0.20 +1.4
2,141,789 - Pf1N1B4_1872 0.20 -0.4
2,141,789 - Pf1N1B4_1872 0.20 +0.8
2,141,789 - Pf1N1B4_1872 0.20 -1.8
2,141,789 - Pf1N1B4_1872 0.20 +1.4
2,141,810 + Pf1N1B4_1872 0.23 +1.2
2,141,810 + Pf1N1B4_1872 0.23 +0.1
2,141,810 + Pf1N1B4_1872 0.23 +0.4
2,141,810 + Pf1N1B4_1872 0.23 +0.7
2,141,811 - Pf1N1B4_1872 0.23 +0.1
2,141,811 - Pf1N1B4_1872 0.23 +0.7
2,141,892 + Pf1N1B4_1872 0.32 +0.6
2,141,893 - Pf1N1B4_1872 0.32 +0.2
2,142,155 + Pf1N1B4_1872 0.60 +0.2
2,142,155 + Pf1N1B4_1872 0.60 +3.4
2,142,202 + +1.2
2,142,202 + Pf1N1B4_1872 0.65 +1.6
2,142,202 + Pf1N1B4_1872 0.65 +0.1
2,142,202 + Pf1N1B4_1872 0.65 +3.4
2,142,202 + Pf1N1B4_1872 0.65 -0.3
2,142,203 - Pf1N1B4_1872 0.65 +0.8
2,142,203 - Pf1N1B4_1872 0.65 +0.5
2,142,229 + Pf1N1B4_1872 0.68 -1.0
2,142,266 + Pf1N1B4_1872 0.72 +1.2
2,142,267 - Pf1N1B4_1872 0.72 -2.3
2,142,287 + Pf1N1B4_1872 0.74 +1.0
2,142,287 + Pf1N1B4_1872 0.74 -0.8
2,142,287 + Pf1N1B4_1872 0.74 -0.2
2,142,287 + -1.2
2,142,470 - +1.5
2,142,470 - +1.1
2,142,526 + -0.4
2,142,526 + +0.2
2,142,526 + -0.1
2,142,526 + -1.0
2,142,526 + -0.9
2,142,527 - -0.1
2,142,527 - -0.3
2,142,527 - -0.4
2,142,527 - +0.9
2,142,527 - +0.2
2,142,585 - -0.2
2,142,585 - +1.4
2,142,600 + -0.2
2,142,600 + +0.8
2,142,600 + -0.6
2,142,600 + +1.1
2,142,601 - +0.1
2,142,648 + -1.9
2,142,649 - +0.6
2,142,649 - +0.2
2,143,643 - -0.8
2,143,643 - +0.6
2,143,648 - -0.2
2,143,648 - -1.3
2,143,648 - +0.2
2,143,648 - +0.0
2,143,648 - +1.1
2,143,659 - -0.2
2,143,670 - -1.6
2,143,752 - Pf1N1B4_1874 0.33 -0.5
2,143,752 - Pf1N1B4_1874 0.33 +0.8
2,143,752 - Pf1N1B4_1874 0.33 -0.4
2,143,752 - -0.2
2,143,788 - Pf1N1B4_1874 0.45 -0.6
2,143,846 + Pf1N1B4_1874 0.66 +1.3
2,143,847 - Pf1N1B4_1874 0.66 +0.4
2,143,847 - Pf1N1B4_1874 0.66 -0.4
2,143,847 - Pf1N1B4_1874 0.66 -1.6
2,143,847 - Pf1N1B4_1874 0.66 +0.5
2,143,847 - +0.2
2,143,847 - Pf1N1B4_1874 0.66 +0.5
2,143,847 - Pf1N1B4_1874 0.66 +0.6
2,143,847 - Pf1N1B4_1874 0.66 -0.1
2,143,847 - Pf1N1B4_1874 0.66 +0.8
2,143,933 + +1.1
2,143,934 - +0.2
2,143,947 + +1.1

Or see this region's nucleotide sequence