Experiment: Cobalt chloride 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_136 and Pf1N1B4_137 are separated by 140 nucleotides Pf1N1B4_137 and Pf1N1B4_138 are separated by 269 nucleotides
Pf1N1B4_136 - Outer membrane pyoverdine eflux protein, at 151,109 to 152,503
_136
Pf1N1B4_137 - Pyoverdine biosynthesis related protein PvdP, at 152,644 to 154,269
_137
Pf1N1B4_138 - Putative dipeptidase, pyoverdin biosynthesis PvdM, at 154,539 to 155,915
_138
Position (kb)
152
153
154
155 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 152.111 kb on + strand, within Pf1N1B4_136 at 152.112 kb on - strand, within Pf1N1B4_136 at 152.112 kb on - strand, within Pf1N1B4_136 at 152.112 kb on - strand, within Pf1N1B4_136 at 152.112 kb on - strand, within Pf1N1B4_136 at 152.382 kb on + strand at 152.405 kb on + strand at 152.406 kb on - strand at 152.406 kb on - strand at 152.459 kb on - strand at 152.469 kb on - strand at 152.469 kb on - strand at 152.501 kb on + strand at 152.501 kb on + strand at 152.502 kb on - strand at 153.251 kb on + strand, within Pf1N1B4_137 at 153.251 kb on + strand, within Pf1N1B4_137 at 153.251 kb on + strand, within Pf1N1B4_137 at 153.252 kb on - strand, within Pf1N1B4_137 at 153.252 kb on - strand at 153.849 kb on - strand, within Pf1N1B4_137 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.849 kb on - strand, within Pf1N1B4_137 at 153.894 kb on - strand, within Pf1N1B4_137 at 153.983 kb on + strand, within Pf1N1B4_137 at 154.200 kb on - strand at 154.311 kb on + strand at 154.312 kb on - strand at 154.312 kb on - strand at 154.312 kb on - strand at 154.322 kb on + strand at 154.323 kb on - strand at 154.338 kb on - strand at 154.351 kb on + strand at 154.352 kb on - strand at 154.428 kb on + strand at 154.575 kb on + strand at 154.576 kb on - strand at 154.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM remove 152,111 + Pf1N1B4_136 0.72 -0.6 152,112 - Pf1N1B4_136 0.72 -0.5 152,112 - Pf1N1B4_136 0.72 -0.1 152,112 - Pf1N1B4_136 0.72 -0.5 152,112 - Pf1N1B4_136 0.72 +0.7 152,382 + +1.4 152,405 + +1.3 152,406 - +0.1 152,406 - +1.7 152,459 - +0.1 152,469 - -0.1 152,469 - -0.8 152,501 + +0.7 152,501 + -0.5 152,502 - -1.2 153,251 + Pf1N1B4_137 0.37 +0.1 153,251 + Pf1N1B4_137 0.37 -1.8 153,251 + Pf1N1B4_137 0.37 -0.5 153,252 - Pf1N1B4_137 0.37 +0.4 153,252 - +1.1 153,849 - Pf1N1B4_137 0.74 -1.0 153,849 - Pf1N1B4_137 0.74 -1.7 153,849 - Pf1N1B4_137 0.74 -2.4 153,894 - Pf1N1B4_137 0.77 -0.2 153,983 + Pf1N1B4_137 0.82 -1.9 154,200 - +1.5 154,311 + +0.4 154,312 - +0.9 154,312 - +1.7 154,312 - -0.5 154,322 + +1.4 154,323 - +0.3 154,338 - +1.7 154,351 + -0.9 154,352 - +1.4 154,428 + +0.9 154,575 + -3.3 154,576 - -0.7 154,576 - -0.5
Or see this region's nucleotide sequence