Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_137

Experiment: Cobalt chloride 0.3125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_136 and Pf1N1B4_137 are separated by 140 nucleotidesPf1N1B4_137 and Pf1N1B4_138 are separated by 269 nucleotides Pf1N1B4_136 - Outer membrane pyoverdine eflux protein, at 151,109 to 152,503 _136 Pf1N1B4_137 - Pyoverdine biosynthesis related protein PvdP, at 152,644 to 154,269 _137 Pf1N1B4_138 - Putative dipeptidase, pyoverdin biosynthesis PvdM, at 154,539 to 155,915 _138 Position (kb) 152 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1at 152.111 kb on + strand, within Pf1N1B4_136at 152.112 kb on - strand, within Pf1N1B4_136at 152.112 kb on - strand, within Pf1N1B4_136at 152.112 kb on - strand, within Pf1N1B4_136at 152.112 kb on - strand, within Pf1N1B4_136at 152.382 kb on + strandat 152.405 kb on + strandat 152.406 kb on - strandat 152.406 kb on - strandat 152.459 kb on - strandat 152.469 kb on - strandat 152.469 kb on - strandat 152.501 kb on + strandat 152.501 kb on + strandat 152.502 kb on - strandat 153.251 kb on + strand, within Pf1N1B4_137at 153.251 kb on + strand, within Pf1N1B4_137at 153.251 kb on + strand, within Pf1N1B4_137at 153.252 kb on - strand, within Pf1N1B4_137at 153.252 kb on - strandat 153.849 kb on - strand, within Pf1N1B4_137at 153.849 kb on - strand, within Pf1N1B4_137at 153.849 kb on - strand, within Pf1N1B4_137at 153.894 kb on - strand, within Pf1N1B4_137at 153.983 kb on + strand, within Pf1N1B4_137at 154.200 kb on - strandat 154.311 kb on + strandat 154.312 kb on - strandat 154.312 kb on - strandat 154.312 kb on - strandat 154.322 kb on + strandat 154.323 kb on - strandat 154.338 kb on - strandat 154.351 kb on + strandat 154.352 kb on - strandat 154.428 kb on + strandat 154.575 kb on + strandat 154.576 kb on - strandat 154.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM
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152,111 + Pf1N1B4_136 0.72 -0.6
152,112 - Pf1N1B4_136 0.72 -0.5
152,112 - Pf1N1B4_136 0.72 -0.1
152,112 - Pf1N1B4_136 0.72 -0.5
152,112 - Pf1N1B4_136 0.72 +0.7
152,382 + +1.4
152,405 + +1.3
152,406 - +0.1
152,406 - +1.7
152,459 - +0.1
152,469 - -0.1
152,469 - -0.8
152,501 + +0.7
152,501 + -0.5
152,502 - -1.2
153,251 + Pf1N1B4_137 0.37 +0.1
153,251 + Pf1N1B4_137 0.37 -1.8
153,251 + Pf1N1B4_137 0.37 -0.5
153,252 - Pf1N1B4_137 0.37 +0.4
153,252 - +1.1
153,849 - Pf1N1B4_137 0.74 -1.0
153,849 - Pf1N1B4_137 0.74 -1.7
153,849 - Pf1N1B4_137 0.74 -2.4
153,894 - Pf1N1B4_137 0.77 -0.2
153,983 + Pf1N1B4_137 0.82 -1.9
154,200 - +1.5
154,311 + +0.4
154,312 - +0.9
154,312 - +1.7
154,312 - -0.5
154,322 + +1.4
154,323 - +0.3
154,338 - +1.7
154,351 + -0.9
154,352 - +1.4
154,428 + +0.9
154,575 + -3.3
154,576 - -0.7
154,576 - -0.5

Or see this region's nucleotide sequence