Experiment: Cobalt chloride 0.3125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1092 and Pf1N1B4_1093 are separated by 12 nucleotides Pf1N1B4_1093 and Pf1N1B4_1094 are separated by 203 nucleotides
Pf1N1B4_1092 - TldD protein, part of TldE/TldD proteolytic complex, at 1,221,806 to 1,223,248
_1092
Pf1N1B4_1093 - FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog), at 1,223,261 to 1,224,115
_1093
Pf1N1B4_1094 - FIG005080: Possible exported protein, at 1,224,319 to 1,228,122
_1094
Position (kb)
1223
1224
1225 Strain fitness (log2 ratio)
-1
0
1
2 at 1222.261 kb on - strand, within Pf1N1B4_1092 at 1222.578 kb on + strand, within Pf1N1B4_1092 at 1222.609 kb on - strand, within Pf1N1B4_1092 at 1223.127 kb on + strand at 1223.248 kb on + strand at 1223.249 kb on - strand at 1223.249 kb on - strand at 1223.249 kb on - strand at 1223.255 kb on + strand at 1223.256 kb on - strand at 1223.262 kb on + strand at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.500 kb on - strand, within Pf1N1B4_1093 at 1223.703 kb on + strand, within Pf1N1B4_1093 at 1223.704 kb on - strand, within Pf1N1B4_1093 at 1223.709 kb on + strand, within Pf1N1B4_1093 at 1223.710 kb on - strand, within Pf1N1B4_1093 at 1223.753 kb on + strand, within Pf1N1B4_1093 at 1223.753 kb on + strand, within Pf1N1B4_1093 at 1223.879 kb on + strand, within Pf1N1B4_1093 at 1223.885 kb on + strand at 1224.151 kb on - strand at 1224.241 kb on + strand at 1224.242 kb on - strand at 1224.271 kb on + strand at 1224.272 kb on - strand at 1224.272 kb on - strand at 1224.283 kb on - strand at 1224.283 kb on - strand at 1224.564 kb on + strand at 1224.775 kb on - strand, within Pf1N1B4_1094
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.3125 mM remove 1,222,261 - Pf1N1B4_1092 0.32 +0.2 1,222,578 + Pf1N1B4_1092 0.53 +2.5 1,222,609 - Pf1N1B4_1092 0.56 +0.5 1,223,127 + +0.5 1,223,248 + +0.5 1,223,249 - +0.5 1,223,249 - +0.2 1,223,249 - +1.2 1,223,255 + +1.2 1,223,256 - +1.5 1,223,262 + -0.3 1,223,499 + Pf1N1B4_1093 0.28 +0.1 1,223,499 + Pf1N1B4_1093 0.28 +0.3 1,223,499 + Pf1N1B4_1093 0.28 -0.1 1,223,499 + Pf1N1B4_1093 0.28 -1.3 1,223,499 + Pf1N1B4_1093 0.28 -0.8 1,223,499 + Pf1N1B4_1093 0.28 -0.5 1,223,500 - Pf1N1B4_1093 0.28 -0.8 1,223,703 + Pf1N1B4_1093 0.52 +0.5 1,223,704 - Pf1N1B4_1093 0.52 -1.1 1,223,709 + Pf1N1B4_1093 0.52 -0.3 1,223,710 - Pf1N1B4_1093 0.53 +0.9 1,223,753 + Pf1N1B4_1093 0.58 -1.1 1,223,753 + Pf1N1B4_1093 0.58 +0.5 1,223,879 + Pf1N1B4_1093 0.72 -0.1 1,223,885 + -0.8 1,224,151 - -0.2 1,224,241 + -0.3 1,224,242 - +1.0 1,224,271 + -0.5 1,224,272 - -0.8 1,224,272 - -0.4 1,224,283 - +2.5 1,224,283 - -0.8 1,224,564 + -0.1 1,224,775 - Pf1N1B4_1094 0.12 +1.5
Or see this region's nucleotide sequence