Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21945 and HSERO_RS21950 are separated by 21 nucleotides HSERO_RS21950 and HSERO_RS21955 are separated by 11 nucleotides HSERO_RS21955 and HSERO_RS21960 are separated by 221 nucleotides HSERO_RS21960 and HSERO_RS21965 are separated by 293 nucleotides HSERO_RS21965 and HSERO_RS21970 are separated by 69 nucleotides
HSERO_RS21945: HSERO_RS21945 - hypothetical protein, at 5,021,619 to 5,022,050
_RS21945
HSERO_RS21950: HSERO_RS21950 - membrane protein, at 5,022,072 to 5,022,479
_RS21950
HSERO_RS21955: HSERO_RS21955 - hypothetical protein, at 5,022,491 to 5,022,799
_RS21955
HSERO_RS21960: HSERO_RS21960 - glutamine amidotransferase, at 5,023,021 to 5,024,157
_RS21960
HSERO_RS21965: HSERO_RS21965 - NAD(P)H dehydrogenase, at 5,024,451 to 5,024,972
_RS21965
HSERO_RS21970: HSERO_RS21970 - potassium transporter, at 5,025,042 to 5,026,862
_RS21970
Position (kb) 5023
5024
5025 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5022.045 kb on + strand at 5022.106 kb on + strand at 5022.157 kb on + strand, within HSERO_RS21950 at 5022.169 kb on - strand, within HSERO_RS21950 at 5022.192 kb on - strand, within HSERO_RS21950 at 5022.197 kb on - strand, within HSERO_RS21950 at 5022.203 kb on - strand, within HSERO_RS21950 at 5022.359 kb on + strand, within HSERO_RS21950 at 5022.468 kb on - strand at 5022.510 kb on + strand at 5022.526 kb on + strand, within HSERO_RS21955 at 5022.534 kb on - strand, within HSERO_RS21955 at 5022.664 kb on + strand, within HSERO_RS21955 at 5022.730 kb on + strand, within HSERO_RS21955 at 5022.741 kb on + strand, within HSERO_RS21955 at 5022.749 kb on - strand, within HSERO_RS21955 at 5022.776 kb on + strand at 5022.784 kb on - strand at 5022.845 kb on + strand at 5022.900 kb on + strand at 5022.902 kb on + strand at 5022.943 kb on + strand at 5023.091 kb on - strand at 5023.143 kb on + strand, within HSERO_RS21960 at 5023.470 kb on + strand, within HSERO_RS21960 at 5023.621 kb on - strand, within HSERO_RS21960 at 5023.802 kb on - strand, within HSERO_RS21960 at 5023.934 kb on + strand, within HSERO_RS21960 at 5024.093 kb on + strand at 5024.375 kb on + strand at 5024.398 kb on - strand at 5024.402 kb on - strand at 5024.476 kb on - strand at 5024.534 kb on + strand, within HSERO_RS21965 at 5024.551 kb on + strand, within HSERO_RS21965 at 5024.731 kb on + strand, within HSERO_RS21965 at 5024.864 kb on + strand, within HSERO_RS21965 at 5024.878 kb on + strand, within HSERO_RS21965
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,022,045 + +3.1 5,022,106 + -0.0 5,022,157 + HSERO_RS21950 0.21 -1.2 5,022,169 - HSERO_RS21950 0.24 -2.9 5,022,192 - HSERO_RS21950 0.29 -0.3 5,022,197 - HSERO_RS21950 0.31 -2.0 5,022,203 - HSERO_RS21950 0.32 -0.7 5,022,359 + HSERO_RS21950 0.70 +0.4 5,022,468 - -0.5 5,022,510 + +0.3 5,022,526 + HSERO_RS21955 0.11 -0.6 5,022,534 - HSERO_RS21955 0.14 -0.6 5,022,664 + HSERO_RS21955 0.56 -3.0 5,022,730 + HSERO_RS21955 0.77 -1.3 5,022,741 + HSERO_RS21955 0.81 -0.7 5,022,749 - HSERO_RS21955 0.83 -0.9 5,022,776 + -0.9 5,022,784 - -0.9 5,022,845 + -0.4 5,022,900 + +0.1 5,022,902 + -3.5 5,022,943 + -0.2 5,023,091 - -1.1 5,023,143 + HSERO_RS21960 0.11 -1.7 5,023,470 + HSERO_RS21960 0.39 +0.2 5,023,621 - HSERO_RS21960 0.53 -1.5 5,023,802 - HSERO_RS21960 0.69 +0.6 5,023,934 + HSERO_RS21960 0.80 +0.3 5,024,093 + +0.5 5,024,375 + -2.3 5,024,398 - -0.2 5,024,402 - -0.4 5,024,476 - +1.0 5,024,534 + HSERO_RS21965 0.16 -0.5 5,024,551 + HSERO_RS21965 0.19 +0.2 5,024,731 + HSERO_RS21965 0.54 +0.6 5,024,864 + HSERO_RS21965 0.79 +0.5 5,024,878 + HSERO_RS21965 0.82 +0.3
Or see this region's nucleotide sequence