Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03795

Experiment: Fructooligosaccharides (FOS) 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03800 and HMPREF1058_RS03795 are separated by 198 nucleotidesHMPREF1058_RS03795 and HMPREF1058_RS03790 are separated by 48 nucleotidesHMPREF1058_RS03790 and HMPREF1058_RS03785 are separated by 128 nucleotides HMPREF1058_RS03800: HMPREF1058_RS03800 - serine hydroxymethyltransferase, at 183,002 to 184,282 _RS03800 HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824 _RS03795 HMPREF1058_RS03790: HMPREF1058_RS03790 - OmpA family protein, at 185,873 to 186,592 _RS03790 HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443 _RS03785 Position (kb) 184 185 186Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 183.510 kb on - strand, within HMPREF1058_RS03800at 183.528 kb on - strand, within HMPREF1058_RS03800at 183.536 kb on - strand, within HMPREF1058_RS03800at 183.636 kb on - strand, within HMPREF1058_RS03800at 183.636 kb on - strand, within HMPREF1058_RS03800at 183.664 kb on + strand, within HMPREF1058_RS03800at 183.786 kb on + strand, within HMPREF1058_RS03800at 183.891 kb on + strand, within HMPREF1058_RS03800at 183.892 kb on - strand, within HMPREF1058_RS03800at 183.940 kb on + strand, within HMPREF1058_RS03800at 184.219 kb on - strandat 184.280 kb on + strandat 184.300 kb on + strandat 184.303 kb on - strandat 184.309 kb on - strandat 184.309 kb on - strandat 184.387 kb on + strandat 184.387 kb on + strandat 184.577 kb on + strandat 184.579 kb on + strandat 184.579 kb on + strandat 184.580 kb on - strandat 184.580 kb on - strandat 184.655 kb on - strand, within HMPREF1058_RS03795at 184.673 kb on - strand, within HMPREF1058_RS03795at 184.693 kb on - strand, within HMPREF1058_RS03795at 184.782 kb on + strand, within HMPREF1058_RS03795at 184.817 kb on - strand, within HMPREF1058_RS03795at 184.840 kb on + strand, within HMPREF1058_RS03795at 184.841 kb on - strand, within HMPREF1058_RS03795at 184.863 kb on + strand, within HMPREF1058_RS03795at 185.011 kb on - strand, within HMPREF1058_RS03795at 185.014 kb on - strand, within HMPREF1058_RS03795at 185.094 kb on + strand, within HMPREF1058_RS03795at 185.179 kb on + strand, within HMPREF1058_RS03795at 185.179 kb on + strand, within HMPREF1058_RS03795at 185.179 kb on + strand, within HMPREF1058_RS03795at 185.179 kb on + strand, within HMPREF1058_RS03795at 185.180 kb on - strand, within HMPREF1058_RS03795at 185.388 kb on - strand, within HMPREF1058_RS03795at 185.423 kb on + strand, within HMPREF1058_RS03795at 185.479 kb on + strand, within HMPREF1058_RS03795at 185.553 kb on + strand, within HMPREF1058_RS03795at 185.558 kb on - strand, within HMPREF1058_RS03795at 185.582 kb on - strand, within HMPREF1058_RS03795at 185.662 kb on + strand, within HMPREF1058_RS03795at 185.841 kb on + strandat 185.841 kb on + strandat 185.854 kb on + strandat 185.855 kb on - strandat 185.899 kb on - strandat 185.911 kb on + strandat 185.912 kb on - strandat 185.944 kb on + strandat 185.945 kb on - strand, within HMPREF1058_RS03790at 185.948 kb on - strand, within HMPREF1058_RS03790at 186.025 kb on + strand, within HMPREF1058_RS03790at 186.068 kb on - strand, within HMPREF1058_RS03790at 186.161 kb on - strand, within HMPREF1058_RS03790at 186.181 kb on - strand, within HMPREF1058_RS03790at 186.276 kb on + strand, within HMPREF1058_RS03790at 186.304 kb on - strand, within HMPREF1058_RS03790at 186.312 kb on - strand, within HMPREF1058_RS03790at 186.320 kb on - strand, within HMPREF1058_RS03790at 186.410 kb on - strand, within HMPREF1058_RS03790at 186.432 kb on + strand, within HMPREF1058_RS03790at 186.433 kb on - strand, within HMPREF1058_RS03790at 186.465 kb on + strand, within HMPREF1058_RS03790at 186.487 kb on + strand, within HMPREF1058_RS03790at 186.487 kb on + strand, within HMPREF1058_RS03790at 186.534 kb on + strandat 186.535 kb on - strandat 186.535 kb on - strandat 186.536 kb on + strandat 186.538 kb on + strandat 186.538 kb on + strandat 186.538 kb on + strandat 186.538 kb on + strandat 186.538 kb on + strandat 186.538 kb on + strandat 186.539 kb on - strandat 186.539 kb on - strandat 186.539 kb on - strandat 186.539 kb on - strandat 186.542 kb on + strandat 186.542 kb on + strandat 186.610 kb on + strandat 186.611 kb on - strandat 186.662 kb on + strandat 186.807 kb on + strand, within HMPREF1058_RS03785at 186.807 kb on + strand, within HMPREF1058_RS03785

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Per-strain Table

Position Strand Gene LocusTag Fraction Fructooligosaccharides (FOS) 5 mg/ml (C)
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183,510 - HMPREF1058_RS03800 0.40 -0.4
183,528 - HMPREF1058_RS03800 0.41 -2.1
183,536 - HMPREF1058_RS03800 0.42 -0.9
183,636 - HMPREF1058_RS03800 0.49 -5.6
183,636 - HMPREF1058_RS03800 0.49 -3.2
183,664 + HMPREF1058_RS03800 0.52 -2.8
183,786 + HMPREF1058_RS03800 0.61 -3.3
183,891 + HMPREF1058_RS03800 0.69 -4.2
183,892 - HMPREF1058_RS03800 0.69 -3.8
183,940 + HMPREF1058_RS03800 0.73 -2.6
184,219 - -2.1
184,280 + -1.4
184,300 + -1.2
184,303 - +0.3
184,309 - -0.9
184,309 - +0.3
184,387 + +0.6
184,387 + -1.1
184,577 + -0.5
184,579 + +0.3
184,579 + +0.3
184,580 - +0.6
184,580 - +0.8
184,655 - HMPREF1058_RS03795 0.13 -0.5
184,673 - HMPREF1058_RS03795 0.14 -0.1
184,693 - HMPREF1058_RS03795 0.16 -0.5
184,782 + HMPREF1058_RS03795 0.22 -0.8
184,817 - HMPREF1058_RS03795 0.25 -0.1
184,840 + HMPREF1058_RS03795 0.27 +0.7
184,841 - HMPREF1058_RS03795 0.27 -1.0
184,863 + HMPREF1058_RS03795 0.28 -0.2
185,011 - HMPREF1058_RS03795 0.39 -0.5
185,014 - HMPREF1058_RS03795 0.40 -0.4
185,094 + HMPREF1058_RS03795 0.46 -0.4
185,179 + HMPREF1058_RS03795 0.52 +0.4
185,179 + HMPREF1058_RS03795 0.52 -0.1
185,179 + HMPREF1058_RS03795 0.52 -0.7
185,179 + HMPREF1058_RS03795 0.52 +0.8
185,180 - HMPREF1058_RS03795 0.52 -1.1
185,388 - HMPREF1058_RS03795 0.67 -1.4
185,423 + HMPREF1058_RS03795 0.70 +0.6
185,479 + HMPREF1058_RS03795 0.74 +0.3
185,553 + HMPREF1058_RS03795 0.80 -0.8
185,558 - HMPREF1058_RS03795 0.80 +0.0
185,582 - HMPREF1058_RS03795 0.82 -1.3
185,662 + HMPREF1058_RS03795 0.88 +0.8
185,841 + -1.1
185,841 + +0.5
185,854 + +0.3
185,855 - -0.5
185,899 - -0.5
185,911 + -2.5
185,912 - -0.4
185,944 + +0.4
185,945 - HMPREF1058_RS03790 0.10 -0.5
185,948 - HMPREF1058_RS03790 0.10 -0.0
186,025 + HMPREF1058_RS03790 0.21 -0.5
186,068 - HMPREF1058_RS03790 0.27 +0.2
186,161 - HMPREF1058_RS03790 0.40 +0.9
186,181 - HMPREF1058_RS03790 0.43 +1.0
186,276 + HMPREF1058_RS03790 0.56 +0.4
186,304 - HMPREF1058_RS03790 0.60 -0.1
186,312 - HMPREF1058_RS03790 0.61 +0.1
186,320 - HMPREF1058_RS03790 0.62 +0.1
186,410 - HMPREF1058_RS03790 0.75 +0.5
186,432 + HMPREF1058_RS03790 0.78 -1.1
186,433 - HMPREF1058_RS03790 0.78 +1.0
186,465 + HMPREF1058_RS03790 0.82 +1.9
186,487 + HMPREF1058_RS03790 0.85 +3.0
186,487 + HMPREF1058_RS03790 0.85 -0.5
186,534 + -1.1
186,535 - +1.3
186,535 - -0.3
186,536 + +0.3
186,538 + +0.7
186,538 + -0.2
186,538 + +0.2
186,538 + +0.1
186,538 + +0.3
186,538 + +1.2
186,539 - +0.1
186,539 - -0.4
186,539 - +0.1
186,539 - -0.1
186,542 + -0.6
186,542 + -0.7
186,610 + +0.2
186,611 - -1.0
186,662 + +0.1
186,807 + HMPREF1058_RS03785 0.12 -0.2
186,807 + HMPREF1058_RS03785 0.12 -0.5

Or see this region's nucleotide sequence