Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03643

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03642 and CCNA_03643 overlap by 1 nucleotidesCCNA_03643 and CCNA_03644 overlap by 34 nucleotidesCCNA_03644 and CCNA_03645 are separated by 171 nucleotides CCNA_03642: CCNA_03642 - succinate dehydrogenase flavoprotein subunit, at 3,801,029 to 3,802,816 _03642 CCNA_03643: CCNA_03643 - succinate dehydrogenase membrane anchor subunit, at 3,802,816 to 3,803,271 _03643 CCNA_03644: CCNA_03644 - succinate dehydrogenase cytochrome B-556 subunit, at 3,803,238 to 3,803,645 _03644 CCNA_03645: CCNA_03645 - nucleotide-sugar pyrophosphatase, at 3,803,817 to 3,804,404 _03645 Position (kb) 3802 3803 3804Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3802.822 kb on - strandat 3803.218 kb on - strand, within CCNA_03643at 3803.241 kb on - strandat 3803.658 kb on - strandat 3803.659 kb on - strandat 3803.775 kb on + strandat 3803.783 kb on - strandat 3803.783 kb on - strandat 3803.806 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.814 kb on + strandat 3803.821 kb on + strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.822 kb on - strandat 3803.829 kb on - strandat 3803.831 kb on + strandat 3803.831 kb on + strandat 3803.834 kb on + strandat 3803.834 kb on + strandat 3803.836 kb on + strandat 3803.839 kb on - strandat 3803.842 kb on - strandat 3803.842 kb on - strandat 3803.850 kb on - strandat 3803.909 kb on - strand, within CCNA_03645at 3803.920 kb on + strand, within CCNA_03645at 3803.925 kb on + strand, within CCNA_03645at 3803.925 kb on - strand, within CCNA_03645at 3803.933 kb on - strand, within CCNA_03645at 3803.933 kb on - strandat 3803.933 kb on - strand, within CCNA_03645at 3803.948 kb on - strand, within CCNA_03645at 3803.951 kb on + strand, within CCNA_03645at 3804.002 kb on - strand, within CCNA_03645at 3804.021 kb on + strand, within CCNA_03645at 3804.050 kb on - strand, within CCNA_03645at 3804.051 kb on + strand, within CCNA_03645at 3804.066 kb on + strand, within CCNA_03645at 3804.071 kb on + strand, within CCNA_03645at 3804.074 kb on - strand, within CCNA_03645at 3804.079 kb on - strand, within CCNA_03645at 3804.092 kb on - strand, within CCNA_03645at 3804.092 kb on - strand, within CCNA_03645at 3804.100 kb on + strand, within CCNA_03645at 3804.111 kb on + strand, within CCNA_03645at 3804.114 kb on - strand, within CCNA_03645at 3804.135 kb on + strand, within CCNA_03645at 3804.141 kb on - strand, within CCNA_03645at 3804.213 kb on - strand, within CCNA_03645at 3804.213 kb on - strand, within CCNA_03645at 3804.236 kb on - strand, within CCNA_03645at 3804.237 kb on + strand, within CCNA_03645at 3804.243 kb on + strand, within CCNA_03645at 3804.245 kb on - strand, within CCNA_03645

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,802,822 - +0.1
3,803,218 - CCNA_03643 0.88 -2.9
3,803,241 - +1.2
3,803,658 - +0.8
3,803,659 - -0.4
3,803,775 + -1.2
3,803,783 - -1.3
3,803,783 - -0.5
3,803,806 + -2.9
3,803,814 + -3.0
3,803,814 + -3.5
3,803,814 + -0.5
3,803,814 + -1.3
3,803,814 + -1.4
3,803,814 + -2.2
3,803,814 + -1.1
3,803,814 + +0.3
3,803,814 + -1.5
3,803,814 + -2.2
3,803,814 + -3.8
3,803,814 + +0.9
3,803,814 + -1.6
3,803,821 + +0.2
3,803,822 - -0.8
3,803,822 - -1.2
3,803,822 - +2.2
3,803,822 - -0.8
3,803,822 - -0.2
3,803,822 - -0.5
3,803,822 - +0.1
3,803,822 - +0.4
3,803,822 - -0.1
3,803,822 - +0.5
3,803,822 - -0.4
3,803,822 - -2.0
3,803,822 - -0.3
3,803,822 - +1.1
3,803,822 - +0.5
3,803,822 - +0.8
3,803,829 - +1.3
3,803,831 + -1.1
3,803,831 + -1.9
3,803,834 + -2.5
3,803,834 + -0.9
3,803,836 + -0.3
3,803,839 - +0.3
3,803,842 - +0.8
3,803,842 - -0.1
3,803,850 - -0.5
3,803,909 - CCNA_03645 0.16 -1.1
3,803,920 + CCNA_03645 0.18 -0.4
3,803,925 + CCNA_03645 0.18 -0.7
3,803,925 - CCNA_03645 0.18 +0.9
3,803,933 - CCNA_03645 0.20 +0.5
3,803,933 - +1.2
3,803,933 - CCNA_03645 0.20 -1.4
3,803,948 - CCNA_03645 0.22 +1.1
3,803,951 + CCNA_03645 0.23 -1.1
3,804,002 - CCNA_03645 0.31 -0.3
3,804,021 + CCNA_03645 0.35 -1.0
3,804,050 - CCNA_03645 0.40 -2.1
3,804,051 + CCNA_03645 0.40 -2.1
3,804,066 + CCNA_03645 0.42 +1.5
3,804,071 + CCNA_03645 0.43 +1.3
3,804,074 - CCNA_03645 0.44 -1.0
3,804,079 - CCNA_03645 0.45 +0.0
3,804,092 - CCNA_03645 0.47 -1.8
3,804,092 - CCNA_03645 0.47 -1.1
3,804,100 + CCNA_03645 0.48 -0.5
3,804,111 + CCNA_03645 0.50 -1.4
3,804,114 - CCNA_03645 0.51 +0.2
3,804,135 + CCNA_03645 0.54 -1.5
3,804,141 - CCNA_03645 0.55 +1.5
3,804,213 - CCNA_03645 0.67 +1.4
3,804,213 - CCNA_03645 0.67 +0.2
3,804,236 - CCNA_03645 0.71 +0.9
3,804,237 + CCNA_03645 0.71 -0.5
3,804,243 + CCNA_03645 0.72 -1.4
3,804,245 - CCNA_03645 0.73 -1.3

Or see this region's nucleotide sequence