Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03642 and CCNA_03643 overlap by 1 nucleotides CCNA_03643 and CCNA_03644 overlap by 34 nucleotides CCNA_03644 and CCNA_03645 are separated by 171 nucleotides
CCNA_03642: CCNA_03642 - succinate dehydrogenase flavoprotein subunit, at 3,801,029 to 3,802,816
_03642
CCNA_03643: CCNA_03643 - succinate dehydrogenase membrane anchor subunit, at 3,802,816 to 3,803,271
_03643
CCNA_03644: CCNA_03644 - succinate dehydrogenase cytochrome B-556 subunit, at 3,803,238 to 3,803,645
_03644
CCNA_03645: CCNA_03645 - nucleotide-sugar pyrophosphatase, at 3,803,817 to 3,804,404
_03645
Position (kb)
3802
3803
3804 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3802.822 kb on - strand at 3803.218 kb on - strand, within CCNA_03643 at 3803.241 kb on - strand at 3803.658 kb on - strand at 3803.659 kb on - strand at 3803.775 kb on + strand at 3803.783 kb on - strand at 3803.783 kb on - strand at 3803.806 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.814 kb on + strand at 3803.821 kb on + strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.822 kb on - strand at 3803.829 kb on - strand at 3803.831 kb on + strand at 3803.831 kb on + strand at 3803.834 kb on + strand at 3803.834 kb on + strand at 3803.836 kb on + strand at 3803.839 kb on - strand at 3803.842 kb on - strand at 3803.842 kb on - strand at 3803.850 kb on - strand at 3803.909 kb on - strand, within CCNA_03645 at 3803.920 kb on + strand, within CCNA_03645 at 3803.925 kb on + strand, within CCNA_03645 at 3803.925 kb on - strand, within CCNA_03645 at 3803.933 kb on - strand, within CCNA_03645 at 3803.933 kb on - strand at 3803.933 kb on - strand, within CCNA_03645 at 3803.948 kb on - strand, within CCNA_03645 at 3803.951 kb on + strand, within CCNA_03645 at 3804.002 kb on - strand, within CCNA_03645 at 3804.021 kb on + strand, within CCNA_03645 at 3804.050 kb on - strand, within CCNA_03645 at 3804.051 kb on + strand, within CCNA_03645 at 3804.066 kb on + strand, within CCNA_03645 at 3804.071 kb on + strand, within CCNA_03645 at 3804.074 kb on - strand, within CCNA_03645 at 3804.079 kb on - strand, within CCNA_03645 at 3804.092 kb on - strand, within CCNA_03645 at 3804.092 kb on - strand, within CCNA_03645 at 3804.100 kb on + strand, within CCNA_03645 at 3804.111 kb on + strand, within CCNA_03645 at 3804.114 kb on - strand, within CCNA_03645 at 3804.135 kb on + strand, within CCNA_03645 at 3804.141 kb on - strand, within CCNA_03645 at 3804.213 kb on - strand, within CCNA_03645 at 3804.213 kb on - strand, within CCNA_03645 at 3804.236 kb on - strand, within CCNA_03645 at 3804.237 kb on + strand, within CCNA_03645 at 3804.243 kb on + strand, within CCNA_03645 at 3804.245 kb on - strand, within CCNA_03645
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,802,822 - +0.1 3,803,218 - CCNA_03643 0.88 -2.9 3,803,241 - +1.2 3,803,658 - +0.8 3,803,659 - -0.4 3,803,775 + -1.2 3,803,783 - -1.3 3,803,783 - -0.5 3,803,806 + -2.9 3,803,814 + -3.0 3,803,814 + -3.5 3,803,814 + -0.5 3,803,814 + -1.3 3,803,814 + -1.4 3,803,814 + -2.2 3,803,814 + -1.1 3,803,814 + +0.3 3,803,814 + -1.5 3,803,814 + -2.2 3,803,814 + -3.8 3,803,814 + +0.9 3,803,814 + -1.6 3,803,821 + +0.2 3,803,822 - -0.8 3,803,822 - -1.2 3,803,822 - +2.2 3,803,822 - -0.8 3,803,822 - -0.2 3,803,822 - -0.5 3,803,822 - +0.1 3,803,822 - +0.4 3,803,822 - -0.1 3,803,822 - +0.5 3,803,822 - -0.4 3,803,822 - -2.0 3,803,822 - -0.3 3,803,822 - +1.1 3,803,822 - +0.5 3,803,822 - +0.8 3,803,829 - +1.3 3,803,831 + -1.1 3,803,831 + -1.9 3,803,834 + -2.5 3,803,834 + -0.9 3,803,836 + -0.3 3,803,839 - +0.3 3,803,842 - +0.8 3,803,842 - -0.1 3,803,850 - -0.5 3,803,909 - CCNA_03645 0.16 -1.1 3,803,920 + CCNA_03645 0.18 -0.4 3,803,925 + CCNA_03645 0.18 -0.7 3,803,925 - CCNA_03645 0.18 +0.9 3,803,933 - CCNA_03645 0.20 +0.5 3,803,933 - +1.2 3,803,933 - CCNA_03645 0.20 -1.4 3,803,948 - CCNA_03645 0.22 +1.1 3,803,951 + CCNA_03645 0.23 -1.1 3,804,002 - CCNA_03645 0.31 -0.3 3,804,021 + CCNA_03645 0.35 -1.0 3,804,050 - CCNA_03645 0.40 -2.1 3,804,051 + CCNA_03645 0.40 -2.1 3,804,066 + CCNA_03645 0.42 +1.5 3,804,071 + CCNA_03645 0.43 +1.3 3,804,074 - CCNA_03645 0.44 -1.0 3,804,079 - CCNA_03645 0.45 +0.0 3,804,092 - CCNA_03645 0.47 -1.8 3,804,092 - CCNA_03645 0.47 -1.1 3,804,100 + CCNA_03645 0.48 -0.5 3,804,111 + CCNA_03645 0.50 -1.4 3,804,114 - CCNA_03645 0.51 +0.2 3,804,135 + CCNA_03645 0.54 -1.5 3,804,141 - CCNA_03645 0.55 +1.5 3,804,213 - CCNA_03645 0.67 +1.4 3,804,213 - CCNA_03645 0.67 +0.2 3,804,236 - CCNA_03645 0.71 +0.9 3,804,237 + CCNA_03645 0.71 -0.5 3,804,243 + CCNA_03645 0.72 -1.4 3,804,245 - CCNA_03645 0.73 -1.3
Or see this region's nucleotide sequence