Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01676

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01675 and CCNA_01676 are separated by 71 nucleotidesCCNA_01676 and CCNA_01677 are separated by 101 nucleotides CCNA_01675: CCNA_01675 - outer membrane protein, at 1,797,735 to 1,799,519 _01675 CCNA_01676: CCNA_01676 - hypothetical protein, at 1,799,591 to 1,803,712 _01676 CCNA_01677: CCNA_01677 - carboxypeptidase G2 precursor, at 1,803,814 to 1,805,058 _01677 Position (kb) 1799 1800 1801 1802 1803 1804Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1799.513 kb on + strandat 1799.530 kb on + strandat 1799.530 kb on + strandat 1799.540 kb on + strandat 1799.587 kb on - strandat 1799.590 kb on + strandat 1799.632 kb on + strandat 1800.431 kb on + strand, within CCNA_01676at 1800.479 kb on + strand, within CCNA_01676at 1800.778 kb on + strand, within CCNA_01676at 1802.399 kb on + strand, within CCNA_01676at 1803.696 kb on + strandat 1803.714 kb on - strandat 1803.748 kb on + strandat 1803.784 kb on - strandat 1803.819 kb on + strandat 1803.822 kb on + strandat 1804.127 kb on - strand, within CCNA_01677at 1804.135 kb on + strand, within CCNA_01677at 1804.190 kb on + strand, within CCNA_01677at 1804.191 kb on - strand, within CCNA_01677at 1804.203 kb on - strand, within CCNA_01677at 1804.330 kb on + strand, within CCNA_01677at 1804.331 kb on + strand, within CCNA_01677at 1804.338 kb on - strand, within CCNA_01677at 1804.338 kb on - strand, within CCNA_01677at 1804.400 kb on + strand, within CCNA_01677at 1804.423 kb on + strand, within CCNA_01677at 1804.462 kb on + strand, within CCNA_01677at 1804.511 kb on - strand, within CCNA_01677at 1804.559 kb on + strand, within CCNA_01677at 1804.559 kb on + strand, within CCNA_01677at 1804.559 kb on + strand, within CCNA_01677at 1804.567 kb on - strand, within CCNA_01677at 1804.666 kb on + strand, within CCNA_01677

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,799,513 + +0.8
1,799,530 + +0.1
1,799,530 + +0.6
1,799,540 + -1.8
1,799,587 - -2.0
1,799,590 + +0.1
1,799,632 + +0.3
1,800,431 + CCNA_01676 0.20 -0.9
1,800,479 + CCNA_01676 0.22 -0.3
1,800,778 + CCNA_01676 0.29 -1.6
1,802,399 + CCNA_01676 0.68 -0.6
1,803,696 + -0.5
1,803,714 - -0.6
1,803,748 + +2.7
1,803,784 - +0.1
1,803,819 + +1.5
1,803,822 + +2.3
1,804,127 - CCNA_01677 0.25 +0.6
1,804,135 + CCNA_01677 0.26 +1.6
1,804,190 + CCNA_01677 0.30 +1.2
1,804,191 - CCNA_01677 0.30 -0.6
1,804,203 - CCNA_01677 0.31 -1.8
1,804,330 + CCNA_01677 0.41 +1.1
1,804,331 + CCNA_01677 0.42 +2.6
1,804,338 - CCNA_01677 0.42 -1.9
1,804,338 - CCNA_01677 0.42 -0.8
1,804,400 + CCNA_01677 0.47 +3.1
1,804,423 + CCNA_01677 0.49 +2.0
1,804,462 + CCNA_01677 0.52 +1.5
1,804,511 - CCNA_01677 0.56 -0.9
1,804,559 + CCNA_01677 0.60 +1.6
1,804,559 + CCNA_01677 0.60 +1.4
1,804,559 + CCNA_01677 0.60 +1.0
1,804,567 - CCNA_01677 0.60 -3.3
1,804,666 + CCNA_01677 0.68 +2.1

Or see this region's nucleotide sequence