Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00813 and CCNA_00814 are separated by 225 nucleotides CCNA_00814 and CCNA_00815 are separated by 192 nucleotides
CCNA_00813: CCNA_00813 - flavin-binding monooxygenase-related protein, at 876,155 to 877,531
_00813
CCNA_00814: CCNA_00814 - hypothetical protein, at 877,757 to 878,080
_00814
CCNA_00815: CCNA_00815 - lignostilbene-alpha,beta-dioxygenase, at 878,273 to 879,724
_00815
Position (kb) 877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.757 kb on + strand, within CCNA_00813 at 876.757 kb on + strand, within CCNA_00813 at 876.798 kb on + strand, within CCNA_00813 at 876.803 kb on + strand, within CCNA_00813 at 876.811 kb on - strand, within CCNA_00813 at 876.811 kb on - strand, within CCNA_00813 at 876.818 kb on - strand, within CCNA_00813 at 876.822 kb on - strand, within CCNA_00813 at 876.822 kb on - strand, within CCNA_00813 at 876.848 kb on - strand, within CCNA_00813 at 876.867 kb on + strand, within CCNA_00813 at 876.887 kb on + strand, within CCNA_00813 at 876.889 kb on + strand, within CCNA_00813 at 876.895 kb on - strand, within CCNA_00813 at 876.896 kb on - strand, within CCNA_00813 at 876.897 kb on - strand, within CCNA_00813 at 876.920 kb on - strand, within CCNA_00813 at 876.959 kb on + strand, within CCNA_00813 at 876.993 kb on - strand, within CCNA_00813 at 877.040 kb on - strand, within CCNA_00813 at 877.040 kb on - strand, within CCNA_00813 at 877.051 kb on - strand, within CCNA_00813 at 877.095 kb on + strand, within CCNA_00813 at 877.101 kb on - strand at 877.103 kb on - strand, within CCNA_00813 at 877.103 kb on - strand, within CCNA_00813 at 877.103 kb on - strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.128 kb on + strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.136 kb on - strand, within CCNA_00813 at 877.146 kb on - strand, within CCNA_00813 at 877.173 kb on - strand, within CCNA_00813 at 877.193 kb on + strand, within CCNA_00813 at 877.193 kb on + strand, within CCNA_00813 at 877.245 kb on + strand, within CCNA_00813 at 877.245 kb on + strand, within CCNA_00813 at 877.252 kb on + strand, within CCNA_00813 at 877.276 kb on - strand, within CCNA_00813 at 877.293 kb on + strand, within CCNA_00813 at 877.296 kb on - strand, within CCNA_00813 at 877.306 kb on + strand, within CCNA_00813 at 877.426 kb on + strand at 877.426 kb on + strand at 877.426 kb on + strand at 877.434 kb on - strand at 877.434 kb on - strand at 877.434 kb on - strand at 877.436 kb on + strand at 877.454 kb on + strand at 877.483 kb on - strand at 877.563 kb on - strand at 877.608 kb on + strand at 877.616 kb on - strand at 877.627 kb on - strand at 877.667 kb on - strand at 877.669 kb on + strand at 877.748 kb on + strand at 877.761 kb on + strand at 877.776 kb on + strand at 877.784 kb on - strand at 877.786 kb on - strand at 877.800 kb on + strand, within CCNA_00814 at 877.800 kb on + strand, within CCNA_00814 at 877.808 kb on - strand, within CCNA_00814 at 877.808 kb on - strand, within CCNA_00814 at 877.808 kb on - strand, within CCNA_00814 at 877.808 kb on - strand, within CCNA_00814 at 877.810 kb on + strand, within CCNA_00814 at 877.813 kb on - strand, within CCNA_00814 at 877.818 kb on - strand, within CCNA_00814 at 877.829 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.881 kb on + strand, within CCNA_00814 at 877.883 kb on - strand, within CCNA_00814 at 877.883 kb on - strand, within CCNA_00814 at 877.889 kb on - strand, within CCNA_00814 at 877.889 kb on - strand, within CCNA_00814 at 877.889 kb on - strand, within CCNA_00814 at 877.889 kb on - strand, within CCNA_00814 at 877.891 kb on + strand, within CCNA_00814 at 877.891 kb on + strand, within CCNA_00814 at 877.899 kb on - strand, within CCNA_00814 at 877.899 kb on - strand, within CCNA_00814 at 877.899 kb on - strand, within CCNA_00814 at 877.920 kb on - strand, within CCNA_00814 at 877.937 kb on + strand, within CCNA_00814 at 877.942 kb on + strand, within CCNA_00814 at 877.950 kb on - strand, within CCNA_00814 at 877.950 kb on - strand, within CCNA_00814 at 877.950 kb on - strand, within CCNA_00814 at 877.950 kb on - strand, within CCNA_00814 at 877.986 kb on + strand, within CCNA_00814 at 878.023 kb on - strand, within CCNA_00814 at 878.053 kb on + strand at 878.054 kb on + strand at 878.061 kb on - strand at 878.061 kb on - strand at 878.061 kb on - strand at 878.061 kb on - strand at 878.061 kb on - strand at 878.082 kb on + strand at 878.087 kb on + strand at 878.101 kb on + strand at 878.109 kb on - strand at 878.109 kb on - strand at 878.109 kb on - strand at 878.109 kb on - strand at 878.133 kb on + strand at 878.141 kb on - strand at 878.146 kb on - strand at 878.166 kb on - strand at 878.170 kb on + strand at 878.178 kb on - strand at 878.178 kb on - strand at 878.185 kb on + strand at 878.192 kb on + strand at 878.204 kb on + strand at 878.205 kb on + strand at 878.206 kb on - strand at 878.212 kb on - strand at 878.212 kb on - strand at 878.212 kb on - strand at 878.212 kb on - strand at 878.212 kb on - strand at 878.212 kb on - strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.239 kb on + strand at 878.247 kb on - strand at 878.247 kb on - strand at 878.247 kb on - strand at 878.247 kb on - strand at 878.247 kb on - strand at 878.247 kb on - strand at 878.247 kb on - strand at 878.247 kb on - strand at 878.279 kb on + strand at 878.292 kb on - strand at 878.307 kb on - strand at 878.311 kb on - strand at 878.321 kb on + strand at 878.329 kb on - strand at 878.341 kb on - strand at 878.355 kb on + strand at 878.363 kb on - strand at 878.385 kb on - strand at 878.431 kb on - strand, within CCNA_00815 at 878.439 kb on + strand, within CCNA_00815 at 878.458 kb on + strand, within CCNA_00815 at 878.464 kb on - strand, within CCNA_00815 at 878.479 kb on + strand, within CCNA_00815 at 878.501 kb on - strand, within CCNA_00815 at 878.501 kb on - strand, within CCNA_00815 at 878.516 kb on + strand, within CCNA_00815 at 878.524 kb on - strand, within CCNA_00815 at 878.524 kb on - strand, within CCNA_00815 at 878.525 kb on + strand, within CCNA_00815 at 878.580 kb on - strand, within CCNA_00815 at 878.590 kb on - strand, within CCNA_00815 at 878.659 kb on + strand, within CCNA_00815 at 878.716 kb on + strand, within CCNA_00815 at 878.723 kb on + strand, within CCNA_00815 at 878.729 kb on - strand, within CCNA_00815 at 878.739 kb on - strand, within CCNA_00815 at 878.741 kb on + strand, within CCNA_00815 at 878.741 kb on + strand, within CCNA_00815 at 878.742 kb on + strand, within CCNA_00815 at 878.744 kb on + strand, within CCNA_00815 at 878.750 kb on - strand, within CCNA_00815 at 878.750 kb on - strand, within CCNA_00815 at 878.813 kb on + strand, within CCNA_00815 at 878.843 kb on - strand, within CCNA_00815 at 878.845 kb on + strand, within CCNA_00815 at 878.845 kb on + strand, within CCNA_00815 at 878.853 kb on - strand, within CCNA_00815 at 878.853 kb on - strand, within CCNA_00815 at 878.853 kb on - strand, within CCNA_00815 at 878.853 kb on - strand, within CCNA_00815 at 878.855 kb on + strand, within CCNA_00815 at 878.855 kb on + strand, within CCNA_00815 at 878.860 kb on + strand, within CCNA_00815 at 878.863 kb on - strand, within CCNA_00815 at 878.917 kb on + strand, within CCNA_00815 at 878.917 kb on + strand, within CCNA_00815 at 878.917 kb on + strand, within CCNA_00815 at 878.917 kb on + strand, within CCNA_00815 at 878.925 kb on - strand, within CCNA_00815 at 878.925 kb on - strand, within CCNA_00815 at 878.937 kb on + strand, within CCNA_00815 at 878.937 kb on + strand, within CCNA_00815 at 878.937 kb on + strand, within CCNA_00815 at 878.938 kb on - strand, within CCNA_00815 at 878.945 kb on - strand, within CCNA_00815 at 878.945 kb on - strand, within CCNA_00815 at 878.945 kb on - strand, within CCNA_00815 at 878.945 kb on - strand, within CCNA_00815 at 878.945 kb on - strand, within CCNA_00815 at 878.985 kb on + strand, within CCNA_00815 at 878.993 kb on - strand, within CCNA_00815 at 879.011 kb on - strand, within CCNA_00815 at 879.011 kb on - strand, within CCNA_00815 at 879.041 kb on - strand, within CCNA_00815
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 876,757 + CCNA_00813 0.44 -1.5 876,757 + CCNA_00813 0.44 -1.9 876,798 + CCNA_00813 0.47 -0.8 876,803 + CCNA_00813 0.47 -2.7 876,811 - CCNA_00813 0.48 -1.2 876,811 - CCNA_00813 0.48 -0.4 876,818 - CCNA_00813 0.48 -0.9 876,822 - CCNA_00813 0.48 -1.6 876,822 - CCNA_00813 0.48 +1.3 876,848 - CCNA_00813 0.50 -2.2 876,867 + CCNA_00813 0.52 -1.3 876,887 + CCNA_00813 0.53 -1.6 876,889 + CCNA_00813 0.53 -0.7 876,895 - CCNA_00813 0.54 -2.9 876,896 - CCNA_00813 0.54 -2.4 876,897 - CCNA_00813 0.54 -1.9 876,920 - CCNA_00813 0.56 -0.4 876,959 + CCNA_00813 0.58 -1.3 876,993 - CCNA_00813 0.61 -2.9 877,040 - CCNA_00813 0.64 -2.6 877,040 - CCNA_00813 0.64 +0.4 877,051 - CCNA_00813 0.65 -1.9 877,095 + CCNA_00813 0.68 -2.6 877,101 - +1.4 877,103 - CCNA_00813 0.69 -1.1 877,103 - CCNA_00813 0.69 -0.6 877,103 - CCNA_00813 0.69 -1.8 877,128 + CCNA_00813 0.71 -1.7 877,128 + CCNA_00813 0.71 +0.5 877,128 + CCNA_00813 0.71 -0.6 877,128 + CCNA_00813 0.71 -0.7 877,128 + CCNA_00813 0.71 -0.0 877,128 + CCNA_00813 0.71 -1.6 877,128 + CCNA_00813 0.71 -2.1 877,128 + CCNA_00813 0.71 +0.9 877,136 - CCNA_00813 0.71 -2.3 877,136 - CCNA_00813 0.71 -0.1 877,136 - CCNA_00813 0.71 -2.3 877,136 - CCNA_00813 0.71 -1.8 877,136 - CCNA_00813 0.71 +0.3 877,136 - CCNA_00813 0.71 -1.6 877,136 - CCNA_00813 0.71 -0.3 877,136 - CCNA_00813 0.71 -0.8 877,146 - CCNA_00813 0.72 +0.1 877,173 - CCNA_00813 0.74 -0.9 877,193 + CCNA_00813 0.75 +0.6 877,193 + CCNA_00813 0.75 +0.1 877,245 + CCNA_00813 0.79 -2.6 877,245 + CCNA_00813 0.79 -0.7 877,252 + CCNA_00813 0.80 +0.0 877,276 - CCNA_00813 0.81 -2.2 877,293 + CCNA_00813 0.83 -2.8 877,296 - CCNA_00813 0.83 -2.7 877,306 + CCNA_00813 0.84 -0.9 877,426 + -1.5 877,426 + +0.4 877,426 + +0.6 877,434 - -0.2 877,434 - -2.3 877,434 - -1.7 877,436 + -1.6 877,454 + -0.4 877,483 - -1.8 877,563 - -2.4 877,608 + +0.7 877,616 - +0.4 877,627 - +0.9 877,667 - -0.5 877,669 + -0.9 877,748 + -2.0 877,761 + -0.9 877,776 + -0.2 877,784 - +0.0 877,786 - +1.5 877,800 + CCNA_00814 0.13 -0.1 877,800 + CCNA_00814 0.13 -2.5 877,808 - CCNA_00814 0.16 +0.4 877,808 - CCNA_00814 0.16 +1.2 877,808 - CCNA_00814 0.16 +1.6 877,808 - CCNA_00814 0.16 -0.0 877,810 + CCNA_00814 0.16 -0.4 877,813 - CCNA_00814 0.17 +0.5 877,818 - CCNA_00814 0.19 +0.6 877,829 + CCNA_00814 0.22 -2.3 877,881 + CCNA_00814 0.38 -1.3 877,881 + CCNA_00814 0.38 -2.3 877,881 + CCNA_00814 0.38 -1.5 877,881 + CCNA_00814 0.38 +0.4 877,881 + CCNA_00814 0.38 -0.2 877,881 + CCNA_00814 0.38 -0.6 877,881 + CCNA_00814 0.38 -1.2 877,881 + CCNA_00814 0.38 -1.0 877,881 + CCNA_00814 0.38 -2.8 877,881 + CCNA_00814 0.38 -1.5 877,881 + CCNA_00814 0.38 -2.2 877,883 - CCNA_00814 0.39 +1.5 877,883 - CCNA_00814 0.39 +0.2 877,889 - CCNA_00814 0.41 +0.6 877,889 - CCNA_00814 0.41 +0.4 877,889 - CCNA_00814 0.41 +0.2 877,889 - CCNA_00814 0.41 +0.9 877,891 + CCNA_00814 0.41 -1.4 877,891 + CCNA_00814 0.41 +1.8 877,899 - CCNA_00814 0.44 +0.5 877,899 - CCNA_00814 0.44 -1.5 877,899 - CCNA_00814 0.44 -0.2 877,920 - CCNA_00814 0.50 +0.8 877,937 + CCNA_00814 0.56 -2.5 877,942 + CCNA_00814 0.57 -1.8 877,950 - CCNA_00814 0.60 +0.1 877,950 - CCNA_00814 0.60 -0.1 877,950 - CCNA_00814 0.60 -0.5 877,950 - CCNA_00814 0.60 +0.1 877,986 + CCNA_00814 0.71 -2.2 878,023 - CCNA_00814 0.82 +0.4 878,053 + -0.8 878,054 + -1.3 878,061 - +0.8 878,061 - -0.6 878,061 - +0.3 878,061 - +1.1 878,061 - -0.1 878,082 + +0.0 878,087 + -1.6 878,101 + -0.3 878,109 - -1.9 878,109 - +1.5 878,109 - -0.1 878,109 - +0.0 878,133 + +0.7 878,141 - -0.3 878,146 - +0.4 878,166 - +1.3 878,170 + -2.2 878,178 - +0.3 878,178 - -1.4 878,185 + -0.1 878,192 + -1.2 878,204 + -1.0 878,205 + -2.3 878,206 - -0.1 878,212 - +0.5 878,212 - +0.3 878,212 - -0.0 878,212 - -0.2 878,212 - +1.1 878,212 - +0.2 878,239 + +0.6 878,239 + -1.3 878,239 + +1.4 878,239 + -0.7 878,239 + -1.7 878,239 + -0.2 878,239 + -1.0 878,239 + -3.5 878,239 + -1.3 878,239 + -1.7 878,247 - -1.7 878,247 - -0.7 878,247 - +1.4 878,247 - +0.6 878,247 - -1.2 878,247 - -0.9 878,247 - +1.3 878,247 - -1.0 878,279 + +0.3 878,292 - -0.0 878,307 - -0.2 878,311 - +0.6 878,321 + -2.4 878,329 - +0.1 878,341 - +0.8 878,355 + +0.8 878,363 - -2.3 878,385 - -0.5 878,431 - CCNA_00815 0.11 +0.5 878,439 + CCNA_00815 0.11 +1.1 878,458 + CCNA_00815 0.13 -1.0 878,464 - CCNA_00815 0.13 +0.0 878,479 + CCNA_00815 0.14 -0.3 878,501 - CCNA_00815 0.16 +2.4 878,501 - CCNA_00815 0.16 +0.3 878,516 + CCNA_00815 0.17 -0.6 878,524 - CCNA_00815 0.17 -0.9 878,524 - CCNA_00815 0.17 -0.3 878,525 + CCNA_00815 0.17 -0.2 878,580 - CCNA_00815 0.21 -0.2 878,590 - CCNA_00815 0.22 -1.0 878,659 + CCNA_00815 0.27 -0.3 878,716 + CCNA_00815 0.31 -2.0 878,723 + CCNA_00815 0.31 -1.5 878,729 - CCNA_00815 0.31 +1.1 878,739 - CCNA_00815 0.32 -0.9 878,741 + CCNA_00815 0.32 -1.8 878,741 + CCNA_00815 0.32 -1.5 878,742 + CCNA_00815 0.32 -1.2 878,744 + CCNA_00815 0.32 +0.2 878,750 - CCNA_00815 0.33 +0.8 878,750 - CCNA_00815 0.33 +0.8 878,813 + CCNA_00815 0.37 -1.5 878,843 - CCNA_00815 0.39 -0.3 878,845 + CCNA_00815 0.39 -2.0 878,845 + CCNA_00815 0.39 -0.4 878,853 - CCNA_00815 0.40 -1.4 878,853 - CCNA_00815 0.40 -1.2 878,853 - CCNA_00815 0.40 -2.0 878,853 - CCNA_00815 0.40 -1.7 878,855 + CCNA_00815 0.40 -0.5 878,855 + CCNA_00815 0.40 -2.9 878,860 + CCNA_00815 0.40 -1.0 878,863 - CCNA_00815 0.41 -0.7 878,917 + CCNA_00815 0.44 -0.5 878,917 + CCNA_00815 0.44 -1.5 878,917 + CCNA_00815 0.44 -1.9 878,917 + CCNA_00815 0.44 +0.3 878,925 - CCNA_00815 0.45 -1.9 878,925 - CCNA_00815 0.45 -1.7 878,937 + CCNA_00815 0.46 -0.5 878,937 + CCNA_00815 0.46 -2.4 878,937 + CCNA_00815 0.46 -1.5 878,938 - CCNA_00815 0.46 -1.7 878,945 - CCNA_00815 0.46 -2.4 878,945 - CCNA_00815 0.46 -0.8 878,945 - CCNA_00815 0.46 -0.3 878,945 - CCNA_00815 0.46 -1.7 878,945 - CCNA_00815 0.46 -1.3 878,985 + CCNA_00815 0.49 +0.1 878,993 - CCNA_00815 0.50 -0.6 879,011 - CCNA_00815 0.51 -0.7 879,011 - CCNA_00815 0.51 -1.2 879,041 - CCNA_00815 0.53 +0.2
Or see this region's nucleotide sequence