Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16505 and BPHYT_RS16510 are separated by 245 nucleotides BPHYT_RS16510 and BPHYT_RS16515 are separated by 450 nucleotides
BPHYT_RS16505: BPHYT_RS16505 - HAD family hydrolase, at 3,742,072 to 3,742,758
_RS16505
BPHYT_RS16510: BPHYT_RS16510 - 3,4-Dihydroxy-2-butanone 4-phosphate synthase, at 3,743,004 to 3,743,723
_RS16510
BPHYT_RS16515: BPHYT_RS16515 - 2-hydroxyacid dehydrogenase, at 3,744,174 to 3,744,863
_RS16515
Position (kb)
3743
3744 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3742.505 kb on - strand, within BPHYT_RS16505 at 3742.505 kb on - strand, within BPHYT_RS16505 at 3742.645 kb on + strand, within BPHYT_RS16505 at 3742.692 kb on + strand at 3742.693 kb on - strand at 3742.693 kb on - strand at 3742.756 kb on + strand at 3742.848 kb on + strand at 3742.914 kb on + strand at 3743.161 kb on - strand, within BPHYT_RS16510 at 3743.867 kb on - strand at 3743.867 kb on - strand at 3743.867 kb on - strand at 3743.867 kb on - strand at 3743.963 kb on + strand at 3744.015 kb on + strand at 3744.085 kb on + strand at 3744.085 kb on + strand at 3744.086 kb on - strand at 3744.086 kb on - strand at 3744.086 kb on - strand at 3744.118 kb on + strand at 3744.296 kb on + strand, within BPHYT_RS16515 at 3744.515 kb on - strand, within BPHYT_RS16515
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,742,505 - BPHYT_RS16505 0.63 +0.4 3,742,505 - BPHYT_RS16505 0.63 +1.1 3,742,645 + BPHYT_RS16505 0.83 -0.1 3,742,692 + -0.0 3,742,693 - -0.4 3,742,693 - -0.2 3,742,756 + +2.2 3,742,848 + -0.0 3,742,914 + -0.7 3,743,161 - BPHYT_RS16510 0.22 +0.0 3,743,867 - +1.4 3,743,867 - +1.8 3,743,867 - -0.3 3,743,867 - -0.8 3,743,963 + -0.5 3,744,015 + -0.4 3,744,085 + -2.3 3,744,085 + -0.2 3,744,086 - +0.0 3,744,086 - +0.7 3,744,086 - +0.1 3,744,118 + +0.5 3,744,296 + BPHYT_RS16515 0.18 -0.3 3,744,515 - BPHYT_RS16515 0.49 +0.6
Or see this region's nucleotide sequence