Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07605

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07600 and BPHYT_RS07605 are separated by 585 nucleotidesBPHYT_RS07605 and BPHYT_RS07610 are separated by 217 nucleotides BPHYT_RS07600: BPHYT_RS07600 - amino acid ABC transporter substrate-binding protein, at 1,728,973 to 1,730,124 _RS07600 BPHYT_RS07605: BPHYT_RS07605 - hypothetical protein, at 1,730,710 to 1,731,171 _RS07605 BPHYT_RS07610: BPHYT_RS07610 - pyridoxamine kinase, at 1,731,389 to 1,732,255 _RS07610 Position (kb) 1730 1731 1732Strain fitness (log2 ratio) -1 0 1at 1730.226 kb on + strandat 1730.313 kb on + strandat 1730.313 kb on + strandat 1730.437 kb on - strandat 1730.442 kb on + strandat 1730.443 kb on - strandat 1730.483 kb on + strandat 1730.483 kb on + strandat 1730.531 kb on - strandat 1731.008 kb on + strand, within BPHYT_RS07605at 1731.012 kb on - strand, within BPHYT_RS07605at 1731.012 kb on - strand, within BPHYT_RS07605at 1731.254 kb on - strandat 1731.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,730,226 + +0.2
1,730,313 + +0.5
1,730,313 + -0.5
1,730,437 - +0.1
1,730,442 + -0.1
1,730,443 - +0.1
1,730,483 + -0.0
1,730,483 + +0.1
1,730,531 - -0.1
1,731,008 + BPHYT_RS07605 0.65 +0.2
1,731,012 - BPHYT_RS07605 0.65 -0.5
1,731,012 - BPHYT_RS07605 0.65 -0.5
1,731,254 - +0.5
1,731,313 + +0.6

Or see this region's nucleotide sequence