Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27845

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27840 and AO356_27845 are separated by 105 nucleotidesAO356_27845 and AO356_27850 overlap by 4 nucleotides AO356_27840: AO356_27840 - sodium:proton antiporter, at 6,353,597 to 6,355,099 _27840 AO356_27845: AO356_27845 - hydrolase, at 6,355,205 to 6,356,026 _27845 AO356_27850: AO356_27850 - glucose-6-phosphate dehydrogenase, at 6,356,023 to 6,357,543 _27850 Position (kb) 6355 6356 6357Strain fitness (log2 ratio) -2 -1 0 1 2at 6354.527 kb on - strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.839 kb on + strand, within AO356_27840at 6354.840 kb on - strand, within AO356_27840at 6354.840 kb on - strand, within AO356_27840at 6355.016 kb on + strandat 6355.046 kb on + strandat 6355.047 kb on - strandat 6355.047 kb on - strandat 6355.077 kb on - strandat 6355.088 kb on + strandat 6355.088 kb on + strandat 6355.089 kb on - strandat 6355.089 kb on - strandat 6355.089 kb on - strandat 6355.089 kb on - strandat 6355.096 kb on - strandat 6355.096 kb on - strandat 6355.096 kb on - strandat 6355.097 kb on + strandat 6355.206 kb on + strandat 6355.221 kb on + strandat 6355.222 kb on - strandat 6355.222 kb on - strandat 6355.222 kb on - strandat 6355.271 kb on + strandat 6355.271 kb on + strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.272 kb on - strandat 6355.461 kb on + strand, within AO356_27845at 6355.584 kb on + strand, within AO356_27845at 6355.723 kb on - strand, within AO356_27845at 6355.761 kb on + strand, within AO356_27845at 6355.762 kb on - strand, within AO356_27845at 6355.762 kb on - strand, within AO356_27845at 6355.762 kb on - strand, within AO356_27845at 6356.219 kb on + strand, within AO356_27850at 6356.219 kb on + strand, within AO356_27850at 6356.220 kb on - strand, within AO356_27850at 6356.220 kb on - strand, within AO356_27850at 6356.220 kb on - strand, within AO356_27850at 6356.220 kb on - strand, within AO356_27850at 6356.220 kb on - strand, within AO356_27850at 6356.220 kb on - strand, within AO356_27850at 6356.220 kb on - strand, within AO356_27850at 6356.268 kb on + strand, within AO356_27850at 6356.270 kb on + strand, within AO356_27850at 6356.271 kb on - strand, within AO356_27850at 6356.376 kb on - strand, within AO356_27850at 6356.420 kb on + strand, within AO356_27850at 6356.421 kb on - strand, within AO356_27850at 6356.489 kb on + strand, within AO356_27850at 6356.490 kb on - strand, within AO356_27850at 6356.543 kb on + strand, within AO356_27850at 6356.543 kb on + strand, within AO356_27850at 6356.544 kb on - strand, within AO356_27850at 6356.544 kb on - strand, within AO356_27850at 6356.628 kb on - strand, within AO356_27850at 6356.814 kb on - strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.863 kb on + strand, within AO356_27850at 6356.864 kb on - strand, within AO356_27850at 6356.877 kb on - strand, within AO356_27850at 6356.957 kb on + strand, within AO356_27850at 6356.957 kb on + strand, within AO356_27850at 6356.957 kb on + strand, within AO356_27850at 6356.958 kb on - strand, within AO356_27850at 6356.972 kb on + strand, within AO356_27850at 6356.972 kb on + strand, within AO356_27850

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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6,354,527 - AO356_27840 0.62 -0.4
6,354,839 + AO356_27840 0.83 -0.7
6,354,839 + AO356_27840 0.83 -1.9
6,354,839 + AO356_27840 0.83 -1.7
6,354,839 + AO356_27840 0.83 +0.9
6,354,840 - AO356_27840 0.83 -0.9
6,354,840 - AO356_27840 0.83 +1.9
6,355,016 + +0.9
6,355,046 + -0.8
6,355,047 - -1.1
6,355,047 - -1.2
6,355,077 - -0.5
6,355,088 + +0.1
6,355,088 + +0.6
6,355,089 - -1.4
6,355,089 - +0.2
6,355,089 - +1.5
6,355,089 - -0.2
6,355,096 - +0.2
6,355,096 - -0.5
6,355,096 - -0.2
6,355,097 + -0.3
6,355,206 + -0.1
6,355,221 + -0.8
6,355,222 - -0.1
6,355,222 - -1.2
6,355,222 - -0.4
6,355,271 + -0.6
6,355,271 + -0.7
6,355,272 - -0.7
6,355,272 - +0.1
6,355,272 - -1.1
6,355,272 - +0.1
6,355,272 - +0.3
6,355,461 + AO356_27845 0.31 +0.3
6,355,584 + AO356_27845 0.46 +0.5
6,355,723 - AO356_27845 0.63 +0.6
6,355,761 + AO356_27845 0.68 -1.7
6,355,762 - AO356_27845 0.68 -0.4
6,355,762 - AO356_27845 0.68 +0.8
6,355,762 - AO356_27845 0.68 +1.7
6,356,219 + AO356_27850 0.13 -0.3
6,356,219 + AO356_27850 0.13 -0.9
6,356,220 - AO356_27850 0.13 +0.5
6,356,220 - AO356_27850 0.13 +0.4
6,356,220 - AO356_27850 0.13 +0.1
6,356,220 - AO356_27850 0.13 +0.1
6,356,220 - AO356_27850 0.13 -1.8
6,356,220 - AO356_27850 0.13 -0.4
6,356,220 - AO356_27850 0.13 -1.0
6,356,268 + AO356_27850 0.16 +0.9
6,356,270 + AO356_27850 0.16 -0.8
6,356,271 - AO356_27850 0.16 +0.1
6,356,376 - AO356_27850 0.23 +0.4
6,356,420 + AO356_27850 0.26 +0.1
6,356,421 - AO356_27850 0.26 -1.3
6,356,489 + AO356_27850 0.31 +0.2
6,356,490 - AO356_27850 0.31 -0.9
6,356,543 + AO356_27850 0.34 +0.1
6,356,543 + AO356_27850 0.34 +0.9
6,356,544 - AO356_27850 0.34 -0.8
6,356,544 - AO356_27850 0.34 -0.3
6,356,628 - AO356_27850 0.40 +0.6
6,356,814 - AO356_27850 0.52 -0.5
6,356,863 + AO356_27850 0.55 +2.4
6,356,863 + AO356_27850 0.55 +0.4
6,356,863 + AO356_27850 0.55 +0.2
6,356,863 + AO356_27850 0.55 -2.2
6,356,863 + AO356_27850 0.55 -0.9
6,356,864 - AO356_27850 0.55 -1.1
6,356,877 - AO356_27850 0.56 -0.6
6,356,957 + AO356_27850 0.61 +1.1
6,356,957 + AO356_27850 0.61 -0.1
6,356,957 + AO356_27850 0.61 +0.8
6,356,958 - AO356_27850 0.61 -0.3
6,356,972 + AO356_27850 0.62 -0.3
6,356,972 + AO356_27850 0.62 +0.4

Or see this region's nucleotide sequence