Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26055

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26050 and AO356_26055 are separated by 238 nucleotidesAO356_26055 and AO356_26060 are separated by 9 nucleotidesAO356_26060 and AO356_26065 are separated by 295 nucleotides AO356_26050: AO356_26050 - chemotaxis protein, at 5,893,460 to 5,895,454 _26050 AO356_26055: AO356_26055 - hypothetical protein, at 5,895,693 to 5,895,881 _26055 AO356_26060: AO356_26060 - fe2+ zn2+ uptake regulation protein, at 5,895,891 to 5,896,271 _26060 AO356_26065: AO356_26065 - acyl-homoserine lactone acylase subunit beta, at 5,896,567 to 5,898,915 _26065 Position (kb) 5895 5896Strain fitness (log2 ratio) -1 0 1at 5894.953 kb on + strand, within AO356_26050at 5894.954 kb on - strand, within AO356_26050at 5894.956 kb on - strand, within AO356_26050at 5895.021 kb on + strand, within AO356_26050at 5895.055 kb on + strand, within AO356_26050at 5895.055 kb on + strand, within AO356_26050at 5895.106 kb on + strand, within AO356_26050at 5895.106 kb on + strand, within AO356_26050at 5895.175 kb on - strand, within AO356_26050at 5895.197 kb on + strand, within AO356_26050at 5895.198 kb on - strand, within AO356_26050at 5895.314 kb on - strandat 5895.423 kb on + strandat 5895.424 kb on - strandat 5895.510 kb on + strandat 5895.511 kb on - strandat 5895.512 kb on + strandat 5895.513 kb on - strandat 5895.513 kb on - strandat 5895.513 kb on - strandat 5895.515 kb on - strandat 5895.515 kb on - strandat 5895.515 kb on - strandat 5895.538 kb on + strandat 5895.539 kb on - strandat 5895.539 kb on - strandat 5895.597 kb on + strandat 5895.598 kb on - strandat 5895.598 kb on - strandat 5895.641 kb on + strandat 5895.642 kb on - strandat 5895.674 kb on + strandat 5895.675 kb on - strandat 5895.999 kb on + strand, within AO356_26060at 5896.312 kb on + strandat 5896.312 kb on + strandat 5896.324 kb on - strandat 5896.611 kb on - strandat 5896.707 kb on + strandat 5896.756 kb on + strandat 5896.757 kb on - strandat 5896.767 kb on + strandat 5896.767 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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5,894,953 + AO356_26050 0.75 +0.4
5,894,954 - AO356_26050 0.75 -1.1
5,894,956 - AO356_26050 0.75 -1.6
5,895,021 + AO356_26050 0.78 +0.7
5,895,055 + AO356_26050 0.80 +0.8
5,895,055 + AO356_26050 0.80 -1.1
5,895,106 + AO356_26050 0.83 +0.1
5,895,106 + AO356_26050 0.83 +0.1
5,895,175 - AO356_26050 0.86 +0.0
5,895,197 + AO356_26050 0.87 -0.5
5,895,198 - AO356_26050 0.87 +0.9
5,895,314 - -0.5
5,895,423 + -1.3
5,895,424 - -0.7
5,895,510 + +0.6
5,895,511 - -1.1
5,895,512 + -0.3
5,895,513 - -1.2
5,895,513 - -1.0
5,895,513 - +0.9
5,895,515 - +1.2
5,895,515 - -1.4
5,895,515 - -0.5
5,895,538 + +0.1
5,895,539 - +0.5
5,895,539 - -0.2
5,895,597 + +1.0
5,895,598 - +0.1
5,895,598 - -1.7
5,895,641 + -0.1
5,895,642 - +0.8
5,895,674 + +0.3
5,895,675 - +0.3
5,895,999 + AO356_26060 0.28 +0.7
5,896,312 + +1.2
5,896,312 + +1.4
5,896,324 - +0.8
5,896,611 - +0.0
5,896,707 + -0.5
5,896,756 + +0.6
5,896,757 - +0.3
5,896,767 + +0.3
5,896,767 + +1.1

Or see this region's nucleotide sequence