Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25315

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25300 and AO356_25305 overlap by 4 nucleotidesAO356_25305 and AO356_25310 are separated by 21 nucleotidesAO356_25310 and AO356_25315 are separated by 5 nucleotidesAO356_25315 and AO356_25320 overlap by 29 nucleotidesAO356_25320 and AO356_25325 overlap by 4 nucleotides AO356_25300: AO356_25300 - hypothetical protein, at 5,726,775 to 5,727,314 _25300 AO356_25305: AO356_25305 - metal ABC transporter ATPase, at 5,727,311 to 5,727,616 _25305 AO356_25310: AO356_25310 - hypothetical protein, at 5,727,638 to 5,728,126 _25310 AO356_25315: AO356_25315 - cyclopropane-fatty-acyl-phospholipid synthase, at 5,728,132 to 5,729,394 _25315 AO356_25320: AO356_25320 - hypothetical protein, at 5,729,366 to 5,730,181 _25320 AO356_25325: AO356_25325 - FAD-dependent oxidoreductase, at 5,730,178 to 5,731,425 _25325 Position (kb) 5728 5729 5730Strain fitness (log2 ratio) -2 -1 0 1 2at 5727.177 kb on + strand, within AO356_25300at 5727.177 kb on + strand, within AO356_25300at 5727.177 kb on + strand, within AO356_25300at 5727.178 kb on - strand, within AO356_25300at 5727.205 kb on - strand, within AO356_25300at 5727.205 kb on - strand, within AO356_25300at 5727.393 kb on - strand, within AO356_25305at 5727.393 kb on - strand, within AO356_25305at 5727.396 kb on + strand, within AO356_25305at 5727.396 kb on + strand, within AO356_25305at 5727.396 kb on + strand, within AO356_25305at 5727.397 kb on - strand, within AO356_25305at 5727.397 kb on - strand, within AO356_25305at 5727.397 kb on - strand, within AO356_25305at 5727.427 kb on + strand, within AO356_25305at 5727.427 kb on + strand, within AO356_25305at 5727.428 kb on - strand, within AO356_25305at 5727.428 kb on - strand, within AO356_25305at 5727.615 kb on - strandat 5727.677 kb on + strandat 5727.677 kb on + strandat 5727.678 kb on - strandat 5727.762 kb on + strand, within AO356_25310at 5727.763 kb on - strand, within AO356_25310at 5727.833 kb on - strand, within AO356_25310at 5728.133 kb on + strandat 5728.230 kb on - strandat 5728.230 kb on - strandat 5728.238 kb on + strandat 5728.239 kb on - strandat 5728.271 kb on + strand, within AO356_25315at 5728.340 kb on + strand, within AO356_25315at 5728.340 kb on + strand, within AO356_25315at 5728.341 kb on - strand, within AO356_25315at 5728.563 kb on - strand, within AO356_25315at 5728.622 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.754 kb on + strand, within AO356_25315at 5728.755 kb on - strand, within AO356_25315at 5728.913 kb on + strand, within AO356_25315at 5728.965 kb on - strand, within AO356_25315at 5728.965 kb on - strand, within AO356_25315at 5728.977 kb on + strand, within AO356_25315at 5728.977 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.147 kb on + strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.148 kb on - strand, within AO356_25315at 5729.425 kb on + strandat 5729.499 kb on + strand, within AO356_25320at 5729.499 kb on + strand, within AO356_25320at 5729.679 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.769 kb on + strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.770 kb on - strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.794 kb on + strand, within AO356_25320at 5729.795 kb on - strand, within AO356_25320at 5729.797 kb on + strand, within AO356_25320at 5729.797 kb on + strand, within AO356_25320at 5730.093 kb on + strand, within AO356_25320at 5730.269 kb on + strandat 5730.269 kb on + strandat 5730.270 kb on - strandat 5730.270 kb on - strandat 5730.333 kb on - strand, within AO356_25325at 5730.333 kb on - strand, within AO356_25325

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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5,727,177 + AO356_25300 0.74 +0.5
5,727,177 + AO356_25300 0.74 +1.2
5,727,177 + AO356_25300 0.74 -0.7
5,727,178 - AO356_25300 0.75 -0.5
5,727,205 - AO356_25300 0.80 +0.3
5,727,205 - AO356_25300 0.80 +0.6
5,727,393 - AO356_25305 0.27 -0.4
5,727,393 - AO356_25305 0.27 -0.3
5,727,396 + AO356_25305 0.28 +0.3
5,727,396 + AO356_25305 0.28 -0.4
5,727,396 + AO356_25305 0.28 -0.0
5,727,397 - AO356_25305 0.28 +0.6
5,727,397 - AO356_25305 0.28 -0.7
5,727,397 - AO356_25305 0.28 +1.3
5,727,427 + AO356_25305 0.38 -0.0
5,727,427 + AO356_25305 0.38 +0.2
5,727,428 - AO356_25305 0.38 +1.5
5,727,428 - AO356_25305 0.38 +0.3
5,727,615 - +1.2
5,727,677 + +0.5
5,727,677 + +0.1
5,727,678 - +0.0
5,727,762 + AO356_25310 0.25 -0.6
5,727,763 - AO356_25310 0.26 -0.0
5,727,833 - AO356_25310 0.40 -1.0
5,728,133 + +0.2
5,728,230 - -0.4
5,728,230 - -0.5
5,728,238 + +0.8
5,728,239 - -0.1
5,728,271 + AO356_25315 0.11 +1.3
5,728,340 + AO356_25315 0.16 +0.9
5,728,340 + AO356_25315 0.16 -0.3
5,728,341 - AO356_25315 0.17 -0.8
5,728,563 - AO356_25315 0.34 -1.1
5,728,622 + AO356_25315 0.39 -0.3
5,728,754 + AO356_25315 0.49 -0.1
5,728,754 + AO356_25315 0.49 -0.4
5,728,754 + AO356_25315 0.49 -0.1
5,728,754 + AO356_25315 0.49 -0.5
5,728,754 + AO356_25315 0.49 +0.2
5,728,754 + AO356_25315 0.49 -0.4
5,728,754 + AO356_25315 0.49 -0.4
5,728,755 - AO356_25315 0.49 +0.4
5,728,913 + AO356_25315 0.62 +0.3
5,728,965 - AO356_25315 0.66 +1.0
5,728,965 - AO356_25315 0.66 +2.3
5,728,977 + AO356_25315 0.67 +0.1
5,728,977 + AO356_25315 0.67 +0.6
5,729,147 + AO356_25315 0.80 -2.6
5,729,147 + AO356_25315 0.80 -0.4
5,729,147 + AO356_25315 0.80 -1.7
5,729,147 + AO356_25315 0.80 +0.0
5,729,147 + AO356_25315 0.80 -0.1
5,729,148 - AO356_25315 0.80 -1.1
5,729,148 - AO356_25315 0.80 +0.3
5,729,148 - AO356_25315 0.80 +0.9
5,729,148 - AO356_25315 0.80 +0.4
5,729,148 - AO356_25315 0.80 +1.0
5,729,425 + -0.8
5,729,499 + AO356_25320 0.16 -0.4
5,729,499 + AO356_25320 0.16 -0.2
5,729,679 + AO356_25320 0.38 +1.4
5,729,769 + AO356_25320 0.49 -0.3
5,729,769 + AO356_25320 0.49 -2.2
5,729,769 + AO356_25320 0.49 -0.0
5,729,770 - AO356_25320 0.50 +1.4
5,729,770 - AO356_25320 0.50 -0.2
5,729,770 - AO356_25320 0.50 +0.4
5,729,794 + AO356_25320 0.52 +0.3
5,729,794 + AO356_25320 0.52 -0.7
5,729,794 + AO356_25320 0.52 -1.1
5,729,795 - AO356_25320 0.53 -1.8
5,729,797 + AO356_25320 0.53 +0.4
5,729,797 + AO356_25320 0.53 +0.5
5,730,093 + AO356_25320 0.89 +0.3
5,730,269 + -0.3
5,730,269 + -0.5
5,730,270 - -0.5
5,730,270 - +0.2
5,730,333 - AO356_25325 0.12 +0.2
5,730,333 - AO356_25325 0.12 +1.0

Or see this region's nucleotide sequence