Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22750

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22745 and AO356_22750 are separated by 148 nucleotidesAO356_22750 and AO356_22755 overlap by 37 nucleotides AO356_22745: AO356_22745 - 2-nitropropane dioxygenase, at 5,079,968 to 5,081,041 _22745 AO356_22750: AO356_22750 - transcriptional regulator, at 5,081,190 to 5,081,678 _22750 AO356_22755: AO356_22755 - 6-O-methylguanine DNA methyltransferase, at 5,081,642 to 5,082,715 _22755 Position (kb) 5081 5082Strain fitness (log2 ratio) -2 -1 0 1at 5080.400 kb on + strand, within AO356_22745at 5080.401 kb on - strand, within AO356_22745at 5080.401 kb on - strand, within AO356_22745at 5080.500 kb on + strand, within AO356_22745at 5080.500 kb on + strand, within AO356_22745at 5080.500 kb on + strand, within AO356_22745at 5080.750 kb on - strand, within AO356_22745at 5081.079 kb on + strandat 5081.080 kb on - strandat 5081.172 kb on + strandat 5081.373 kb on + strand, within AO356_22750at 5081.374 kb on - strand, within AO356_22750at 5081.374 kb on - strand, within AO356_22750at 5081.382 kb on + strand, within AO356_22750at 5081.382 kb on + strand, within AO356_22750at 5081.382 kb on + strand, within AO356_22750at 5081.382 kb on + strand, within AO356_22750at 5081.383 kb on - strand, within AO356_22750at 5081.383 kb on - strand, within AO356_22750at 5081.482 kb on - strand, within AO356_22750at 5081.482 kb on - strand, within AO356_22750at 5081.550 kb on + strand, within AO356_22750at 5081.550 kb on + strand, within AO356_22750at 5081.550 kb on + strand, within AO356_22750at 5081.605 kb on - strand, within AO356_22750at 5081.631 kb on + strandat 5081.631 kb on + strandat 5081.631 kb on + strandat 5081.631 kb on + strandat 5081.631 kb on + strandat 5081.632 kb on - strandat 5081.632 kb on - strandat 5081.632 kb on - strandat 5081.632 kb on - strandat 5081.632 kb on - strandat 5082.208 kb on - strand, within AO356_22755at 5082.208 kb on - strand, within AO356_22755at 5082.208 kb on - strand, within AO356_22755at 5082.208 kb on - strand, within AO356_22755at 5082.597 kb on + strand, within AO356_22755at 5082.597 kb on + strand, within AO356_22755at 5082.597 kb on + strand, within AO356_22755at 5082.597 kb on + strand, within AO356_22755at 5082.598 kb on - strand, within AO356_22755at 5082.598 kb on - strand, within AO356_22755at 5082.598 kb on - strand, within AO356_22755at 5082.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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5,080,400 + AO356_22745 0.40 -0.8
5,080,401 - AO356_22745 0.40 +0.4
5,080,401 - AO356_22745 0.40 +0.4
5,080,500 + AO356_22745 0.50 +0.5
5,080,500 + AO356_22745 0.50 -0.2
5,080,500 + AO356_22745 0.50 +1.0
5,080,750 - AO356_22745 0.73 -0.7
5,081,079 + +0.7
5,081,080 - -0.8
5,081,172 + +0.5
5,081,373 + AO356_22750 0.37 -2.3
5,081,374 - AO356_22750 0.38 -0.8
5,081,374 - AO356_22750 0.38 -0.7
5,081,382 + AO356_22750 0.39 +0.7
5,081,382 + AO356_22750 0.39 -1.0
5,081,382 + AO356_22750 0.39 -0.1
5,081,382 + AO356_22750 0.39 -0.5
5,081,383 - AO356_22750 0.39 -0.4
5,081,383 - AO356_22750 0.39 -0.7
5,081,482 - AO356_22750 0.60 -0.2
5,081,482 - AO356_22750 0.60 -0.2
5,081,550 + AO356_22750 0.74 -1.7
5,081,550 + AO356_22750 0.74 -1.4
5,081,550 + AO356_22750 0.74 +0.8
5,081,605 - AO356_22750 0.85 -0.0
5,081,631 + +1.0
5,081,631 + +0.6
5,081,631 + -0.4
5,081,631 + +0.2
5,081,631 + +1.0
5,081,632 - -0.3
5,081,632 - -0.5
5,081,632 - +0.9
5,081,632 - +0.2
5,081,632 - -0.5
5,082,208 - AO356_22755 0.53 +0.7
5,082,208 - AO356_22755 0.53 -0.7
5,082,208 - AO356_22755 0.53 +0.7
5,082,208 - AO356_22755 0.53 -0.5
5,082,597 + AO356_22755 0.89 +0.1
5,082,597 + AO356_22755 0.89 -0.4
5,082,597 + AO356_22755 0.89 +0.2
5,082,597 + AO356_22755 0.89 +0.6
5,082,598 - AO356_22755 0.89 -0.8
5,082,598 - AO356_22755 0.89 -0.3
5,082,598 - AO356_22755 0.89 -0.0
5,082,622 - +0.3

Or see this region's nucleotide sequence