Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22435

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22430 and AO356_22435 are separated by 205 nucleotidesAO356_22435 and AO356_22440 are separated by 106 nucleotides AO356_22430: AO356_22430 - hypothetical protein, at 5,013,947 to 5,014,621 _22430 AO356_22435: AO356_22435 - decarboxylase, at 5,014,827 to 5,015,201 _22435 AO356_22440: AO356_22440 - LysR family transcriptional regulator, at 5,015,308 to 5,016,240 _22440 Position (kb) 5014 5015 5016Strain fitness (log2 ratio) -2 -1 0 1 2at 5013.946 kb on + strandat 5014.052 kb on + strand, within AO356_22430at 5014.187 kb on - strand, within AO356_22430at 5014.360 kb on + strand, within AO356_22430at 5014.367 kb on - strand, within AO356_22430at 5014.369 kb on + strand, within AO356_22430at 5014.419 kb on + strand, within AO356_22430at 5014.658 kb on - strandat 5014.658 kb on - strandat 5014.726 kb on + strandat 5014.734 kb on + strandat 5014.735 kb on - strandat 5014.735 kb on - strandat 5014.769 kb on + strandat 5014.777 kb on + strandat 5014.778 kb on - strandat 5014.803 kb on + strandat 5014.804 kb on - strandat 5014.828 kb on + strandat 5014.828 kb on + strandat 5014.829 kb on - strandat 5015.046 kb on + strand, within AO356_22435at 5015.046 kb on + strand, within AO356_22435at 5015.046 kb on + strand, within AO356_22435at 5015.046 kb on + strand, within AO356_22435at 5015.047 kb on - strand, within AO356_22435at 5015.151 kb on + strand, within AO356_22435at 5015.151 kb on + strand, within AO356_22435at 5015.151 kb on + strand, within AO356_22435at 5015.151 kb on + strand, within AO356_22435at 5015.152 kb on - strand, within AO356_22435at 5015.152 kb on - strand, within AO356_22435at 5015.152 kb on - strand, within AO356_22435at 5015.152 kb on - strand, within AO356_22435at 5015.156 kb on - strand, within AO356_22435at 5015.201 kb on + strandat 5015.209 kb on - strandat 5015.239 kb on + strandat 5015.239 kb on + strandat 5015.240 kb on - strandat 5015.240 kb on - strandat 5015.262 kb on + strandat 5015.263 kb on - strandat 5015.271 kb on + strandat 5015.271 kb on + strandat 5015.272 kb on - strandat 5015.274 kb on + strandat 5015.295 kb on - strandat 5015.336 kb on + strandat 5015.336 kb on + strandat 5015.336 kb on + strandat 5015.336 kb on + strandat 5015.336 kb on + strandat 5015.336 kb on + strandat 5015.337 kb on - strandat 5015.337 kb on - strandat 5015.344 kb on - strandat 5015.487 kb on - strand, within AO356_22440at 5015.630 kb on + strand, within AO356_22440at 5015.631 kb on - strand, within AO356_22440at 5015.631 kb on - strand, within AO356_22440at 5015.631 kb on - strand, within AO356_22440at 5015.631 kb on - strand, within AO356_22440at 5015.665 kb on + strand, within AO356_22440at 5015.769 kb on + strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.780 kb on - strand, within AO356_22440at 5015.894 kb on + strand, within AO356_22440at 5015.894 kb on + strand, within AO356_22440at 5015.894 kb on + strand, within AO356_22440at 5015.895 kb on - strand, within AO356_22440at 5015.895 kb on - strand, within AO356_22440at 5015.895 kb on - strand, within AO356_22440at 5015.902 kb on - strand, within AO356_22440at 5015.976 kb on + strand, within AO356_22440at 5016.085 kb on + strand, within AO356_22440at 5016.085 kb on + strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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5,013,946 + -0.5
5,014,052 + AO356_22430 0.16 -1.2
5,014,187 - AO356_22430 0.36 +0.5
5,014,360 + AO356_22430 0.61 -0.4
5,014,367 - AO356_22430 0.62 -1.5
5,014,369 + AO356_22430 0.63 -0.4
5,014,419 + AO356_22430 0.70 -1.3
5,014,658 - +1.4
5,014,658 - -0.3
5,014,726 + +0.6
5,014,734 + -1.3
5,014,735 - +0.2
5,014,735 - -0.8
5,014,769 + +1.6
5,014,777 + -0.5
5,014,778 - +1.0
5,014,803 + -0.0
5,014,804 - +0.3
5,014,828 + -1.2
5,014,828 + +0.3
5,014,829 - -1.0
5,015,046 + AO356_22435 0.58 +0.8
5,015,046 + AO356_22435 0.58 +0.2
5,015,046 + AO356_22435 0.58 +0.1
5,015,046 + AO356_22435 0.58 -0.3
5,015,047 - AO356_22435 0.59 +0.6
5,015,151 + AO356_22435 0.86 -1.2
5,015,151 + AO356_22435 0.86 -0.7
5,015,151 + AO356_22435 0.86 +0.5
5,015,151 + AO356_22435 0.86 +0.5
5,015,152 - AO356_22435 0.87 +0.2
5,015,152 - AO356_22435 0.87 -0.4
5,015,152 - AO356_22435 0.87 +0.2
5,015,152 - AO356_22435 0.87 +0.6
5,015,156 - AO356_22435 0.88 -0.3
5,015,201 + +0.1
5,015,209 - +0.2
5,015,239 + +0.6
5,015,239 + -1.2
5,015,240 - -0.0
5,015,240 - -0.3
5,015,262 + +0.2
5,015,263 - +0.1
5,015,271 + +0.9
5,015,271 + -0.3
5,015,272 - -0.0
5,015,274 + -0.5
5,015,295 - -0.0
5,015,336 + +1.2
5,015,336 + -0.8
5,015,336 + +1.6
5,015,336 + +0.9
5,015,336 + -1.5
5,015,336 + -0.3
5,015,337 - -0.0
5,015,337 - +0.5
5,015,344 - -0.0
5,015,487 - AO356_22440 0.19 +1.4
5,015,630 + AO356_22440 0.35 +0.4
5,015,631 - AO356_22440 0.35 +0.6
5,015,631 - AO356_22440 0.35 +0.6
5,015,631 - AO356_22440 0.35 -1.2
5,015,631 - AO356_22440 0.35 -1.4
5,015,665 + AO356_22440 0.38 -0.3
5,015,769 + AO356_22440 0.49 +1.3
5,015,770 - AO356_22440 0.50 +1.4
5,015,770 - AO356_22440 0.50 +1.2
5,015,770 - AO356_22440 0.50 -1.2
5,015,770 - AO356_22440 0.50 +0.2
5,015,780 - AO356_22440 0.51 -2.7
5,015,894 + AO356_22440 0.63 +0.2
5,015,894 + AO356_22440 0.63 -0.1
5,015,894 + AO356_22440 0.63 -0.3
5,015,895 - AO356_22440 0.63 -0.7
5,015,895 - AO356_22440 0.63 +1.9
5,015,895 - AO356_22440 0.63 +2.3
5,015,902 - AO356_22440 0.64 +0.4
5,015,976 + AO356_22440 0.72 +0.8
5,016,085 + AO356_22440 0.83 -0.1
5,016,085 + AO356_22440 0.83 -1.1
5,016,086 - AO356_22440 0.83 +0.2
5,016,086 - AO356_22440 0.83 +0.2
5,016,086 - AO356_22440 0.83 -1.2
5,016,086 - AO356_22440 0.83 +0.9

Or see this region's nucleotide sequence