Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20725 and AO356_20730 are separated by 250 nucleotides AO356_20730 and AO356_20735 are separated by 74 nucleotides AO356_20735 and AO356_20740 are separated by 99 nucleotides AO356_20740 and AO356_20745 are separated by 47 nucleotides
AO356_20725: AO356_20725 - diaminopimelate epimerase, at 4,620,780 to 4,621,583
_20725
AO356_20730: AO356_20730 - hypothetical protein, at 4,621,834 to 4,622,394
_20730
AO356_20735: AO356_20735 - Suppressor of fused protein (SUFU), at 4,622,469 to 4,623,284
_20735
AO356_20740: AO356_20740 - cell wall assembly protein, at 4,623,384 to 4,624,007
_20740
AO356_20745: AO356_20745 - hypothetical protein, at 4,624,055 to 4,624,741
_20745
Position (kb)
4622
4623
4624 Strain fitness (log2 ratio)
-2
-1
0
1 at 4621.589 kb on + strand at 4621.590 kb on - strand at 4621.667 kb on + strand at 4621.667 kb on + strand at 4621.668 kb on - strand at 4621.668 kb on - strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.671 kb on + strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.672 kb on - strand at 4621.946 kb on - strand, within AO356_20730 at 4621.946 kb on - strand, within AO356_20730 at 4621.946 kb on - strand, within AO356_20730 at 4621.946 kb on - strand, within AO356_20730 at 4621.970 kb on + strand, within AO356_20730 at 4621.971 kb on - strand, within AO356_20730 at 4622.001 kb on + strand, within AO356_20730 at 4622.002 kb on - strand, within AO356_20730 at 4622.002 kb on - strand, within AO356_20730 at 4622.002 kb on - strand, within AO356_20730 at 4622.008 kb on - strand, within AO356_20730 at 4622.085 kb on - strand, within AO356_20730 at 4622.204 kb on + strand, within AO356_20730 at 4622.205 kb on - strand, within AO356_20730 at 4622.362 kb on + strand at 4622.362 kb on + strand at 4622.362 kb on + strand at 4622.363 kb on - strand at 4622.363 kb on - strand at 4622.363 kb on - strand at 4622.363 kb on - strand at 4622.363 kb on - strand at 4622.394 kb on + strand at 4622.394 kb on + strand at 4622.394 kb on + strand at 4622.394 kb on + strand at 4622.394 kb on + strand at 4622.395 kb on - strand at 4622.395 kb on - strand at 4622.395 kb on - strand at 4622.395 kb on - strand at 4622.436 kb on + strand at 4622.436 kb on + strand at 4622.436 kb on + strand at 4622.448 kb on - strand at 4622.665 kb on - strand, within AO356_20735 at 4622.860 kb on - strand, within AO356_20735 at 4623.154 kb on + strand, within AO356_20735 at 4623.180 kb on + strand, within AO356_20735 at 4623.180 kb on + strand, within AO356_20735 at 4623.180 kb on + strand, within AO356_20735 at 4623.180 kb on + strand, within AO356_20735 at 4623.251 kb on + strand at 4623.251 kb on + strand at 4623.251 kb on + strand at 4623.252 kb on - strand at 4623.252 kb on - strand at 4623.382 kb on - strand at 4623.522 kb on + strand, within AO356_20740 at 4623.523 kb on - strand, within AO356_20740 at 4623.531 kb on + strand, within AO356_20740 at 4623.531 kb on + strand, within AO356_20740 at 4623.531 kb on + strand, within AO356_20740 at 4623.532 kb on - strand, within AO356_20740 at 4623.532 kb on - strand, within AO356_20740 at 4623.532 kb on - strand, within AO356_20740 at 4623.532 kb on - strand, within AO356_20740 at 4623.532 kb on - strand, within AO356_20740 at 4623.589 kb on - strand, within AO356_20740 at 4623.612 kb on + strand, within AO356_20740 at 4623.612 kb on + strand, within AO356_20740 at 4623.613 kb on - strand, within AO356_20740 at 4623.613 kb on - strand, within AO356_20740 at 4623.707 kb on + strand, within AO356_20740 at 4623.707 kb on + strand, within AO356_20740 at 4623.804 kb on + strand, within AO356_20740 at 4623.804 kb on + strand, within AO356_20740 at 4623.804 kb on + strand, within AO356_20740 at 4623.804 kb on + strand, within AO356_20740 at 4623.804 kb on + strand, within AO356_20740 at 4623.805 kb on - strand, within AO356_20740 at 4623.805 kb on - strand, within AO356_20740 at 4623.805 kb on - strand, within AO356_20740 at 4623.805 kb on - strand, within AO356_20740 at 4623.805 kb on - strand, within AO356_20740 at 4623.805 kb on - strand, within AO356_20740 at 4623.805 kb on - strand, within AO356_20740 at 4623.834 kb on + strand, within AO356_20740 at 4623.835 kb on - strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.849 kb on + strand, within AO356_20740 at 4623.850 kb on - strand, within AO356_20740 at 4623.854 kb on - strand, within AO356_20740 at 4623.878 kb on + strand, within AO356_20740 at 4623.878 kb on + strand, within AO356_20740 at 4623.878 kb on + strand, within AO356_20740 at 4623.878 kb on + strand, within AO356_20740 at 4623.879 kb on - strand, within AO356_20740 at 4624.119 kb on + strand at 4624.120 kb on - strand at 4624.132 kb on + strand, within AO356_20745 at 4624.134 kb on + strand, within AO356_20745 at 4624.134 kb on + strand, within AO356_20745 at 4624.135 kb on - strand, within AO356_20745 at 4624.135 kb on - strand, within AO356_20745 at 4624.135 kb on - strand, within AO356_20745 at 4624.135 kb on - strand, within AO356_20745 at 4624.135 kb on - strand, within AO356_20745 at 4624.188 kb on + strand, within AO356_20745 at 4624.212 kb on + strand, within AO356_20745 at 4624.236 kb on + strand, within AO356_20745 at 4624.236 kb on + strand, within AO356_20745
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 4,621,589 + -1.0 4,621,590 - +0.7 4,621,667 + +0.3 4,621,667 + +0.0 4,621,668 - +0.3 4,621,668 - -0.3 4,621,671 + +0.3 4,621,671 + +0.2 4,621,671 + +1.1 4,621,671 + -0.4 4,621,671 + -0.2 4,621,671 + +0.3 4,621,671 + +0.8 4,621,671 + -0.1 4,621,671 + -0.3 4,621,671 + +0.3 4,621,671 + +0.6 4,621,671 + +0.3 4,621,672 - +0.8 4,621,672 - -0.4 4,621,672 - -0.3 4,621,672 - -0.8 4,621,672 - -0.4 4,621,672 - +0.6 4,621,672 - -1.8 4,621,672 - +1.2 4,621,672 - -0.8 4,621,672 - -0.3 4,621,672 - -1.6 4,621,672 - -1.8 4,621,672 - +0.6 4,621,672 - +1.6 4,621,946 - AO356_20730 0.20 +1.4 4,621,946 - AO356_20730 0.20 +0.1 4,621,946 - AO356_20730 0.20 -0.5 4,621,946 - AO356_20730 0.20 -0.4 4,621,970 + AO356_20730 0.24 -0.8 4,621,971 - AO356_20730 0.24 +0.2 4,622,001 + AO356_20730 0.30 +0.5 4,622,002 - AO356_20730 0.30 -1.2 4,622,002 - AO356_20730 0.30 -0.3 4,622,002 - AO356_20730 0.30 +0.4 4,622,008 - AO356_20730 0.31 -0.2 4,622,085 - AO356_20730 0.45 +0.8 4,622,204 + AO356_20730 0.66 -0.7 4,622,205 - AO356_20730 0.66 -0.4 4,622,362 + -0.1 4,622,362 + -0.3 4,622,362 + +0.1 4,622,363 - +0.9 4,622,363 - -0.1 4,622,363 - -1.6 4,622,363 - +0.2 4,622,363 - +0.7 4,622,394 + -0.9 4,622,394 + -0.5 4,622,394 + -1.7 4,622,394 + +0.1 4,622,394 + +0.5 4,622,395 - +0.3 4,622,395 - +0.8 4,622,395 - -0.8 4,622,395 - +1.0 4,622,436 + +0.3 4,622,436 + +0.4 4,622,436 + -0.0 4,622,448 - -0.3 4,622,665 - AO356_20735 0.24 +0.4 4,622,860 - AO356_20735 0.48 -0.2 4,623,154 + AO356_20735 0.84 +0.7 4,623,180 + AO356_20735 0.87 +0.3 4,623,180 + AO356_20735 0.87 +0.3 4,623,180 + AO356_20735 0.87 +0.2 4,623,180 + AO356_20735 0.87 +1.1 4,623,251 + +1.6 4,623,251 + -1.0 4,623,251 + +0.6 4,623,252 - +1.0 4,623,252 - +1.6 4,623,382 - +0.3 4,623,522 + AO356_20740 0.22 -0.2 4,623,523 - AO356_20740 0.22 +0.4 4,623,531 + AO356_20740 0.24 -0.8 4,623,531 + AO356_20740 0.24 -2.2 4,623,531 + AO356_20740 0.24 +0.4 4,623,532 - AO356_20740 0.24 +0.2 4,623,532 - AO356_20740 0.24 +0.3 4,623,532 - AO356_20740 0.24 +0.2 4,623,532 - AO356_20740 0.24 +0.4 4,623,532 - AO356_20740 0.24 -0.1 4,623,589 - AO356_20740 0.33 +0.8 4,623,612 + AO356_20740 0.37 -1.6 4,623,612 + AO356_20740 0.37 -0.8 4,623,613 - AO356_20740 0.37 -0.1 4,623,613 - AO356_20740 0.37 +0.4 4,623,707 + AO356_20740 0.52 +0.1 4,623,707 + AO356_20740 0.52 +0.4 4,623,804 + AO356_20740 0.67 +1.5 4,623,804 + AO356_20740 0.67 +0.6 4,623,804 + AO356_20740 0.67 -0.4 4,623,804 + AO356_20740 0.67 -0.1 4,623,804 + AO356_20740 0.67 +0.1 4,623,805 - AO356_20740 0.67 +1.2 4,623,805 - AO356_20740 0.67 -0.3 4,623,805 - AO356_20740 0.67 -0.5 4,623,805 - AO356_20740 0.67 -0.4 4,623,805 - AO356_20740 0.67 -0.3 4,623,805 - AO356_20740 0.67 +1.0 4,623,805 - AO356_20740 0.67 -0.8 4,623,834 + AO356_20740 0.72 -0.0 4,623,835 - AO356_20740 0.72 +0.9 4,623,849 + AO356_20740 0.75 -0.7 4,623,849 + AO356_20740 0.75 -0.0 4,623,849 + AO356_20740 0.75 -0.1 4,623,849 + AO356_20740 0.75 -0.7 4,623,849 + AO356_20740 0.75 +0.6 4,623,849 + AO356_20740 0.75 -1.3 4,623,849 + AO356_20740 0.75 +0.6 4,623,849 + AO356_20740 0.75 -0.7 4,623,850 - AO356_20740 0.75 -0.2 4,623,854 - AO356_20740 0.75 +0.0 4,623,878 + AO356_20740 0.79 +0.5 4,623,878 + AO356_20740 0.79 -0.3 4,623,878 + AO356_20740 0.79 -0.3 4,623,878 + AO356_20740 0.79 -0.4 4,623,879 - AO356_20740 0.79 -1.1 4,624,119 + +0.2 4,624,120 - +1.0 4,624,132 + AO356_20745 0.11 -0.6 4,624,134 + AO356_20745 0.11 -1.2 4,624,134 + AO356_20745 0.11 +0.2 4,624,135 - AO356_20745 0.12 +0.1 4,624,135 - AO356_20745 0.12 -2.4 4,624,135 - AO356_20745 0.12 +0.2 4,624,135 - AO356_20745 0.12 +0.3 4,624,135 - AO356_20745 0.12 +0.0 4,624,188 + AO356_20745 0.19 +0.8 4,624,212 + AO356_20745 0.23 +0.0 4,624,236 + AO356_20745 0.26 +0.6 4,624,236 + AO356_20745 0.26 +0.8
Or see this region's nucleotide sequence