Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19865

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19860 and AO356_19865 are separated by 206 nucleotidesAO356_19865 and AO356_19870 are separated by 110 nucleotides AO356_19860: AO356_19860 - short-chain dehydrogenase, at 4,452,140 to 4,452,901 _19860 AO356_19865: AO356_19865 - GntR family transcriptional regulator, at 4,453,108 to 4,454,496 _19865 AO356_19870: AO356_19870 - chemotaxis protein, at 4,454,607 to 4,456,574 _19870 Position (kb) 4453 4454 4455Strain fitness (log2 ratio) -1 0 1 2at 4452.277 kb on + strand, within AO356_19860at 4452.278 kb on - strand, within AO356_19860at 4452.278 kb on - strand, within AO356_19860at 4452.383 kb on + strand, within AO356_19860at 4452.383 kb on + strand, within AO356_19860at 4452.384 kb on - strand, within AO356_19860at 4452.384 kb on - strand, within AO356_19860at 4452.384 kb on - strand, within AO356_19860at 4452.398 kb on + strand, within AO356_19860at 4452.398 kb on + strand, within AO356_19860at 4452.399 kb on - strand, within AO356_19860at 4452.451 kb on + strand, within AO356_19860at 4452.515 kb on + strand, within AO356_19860at 4452.515 kb on + strand, within AO356_19860at 4452.515 kb on + strand, within AO356_19860at 4452.516 kb on - strand, within AO356_19860at 4452.608 kb on + strand, within AO356_19860at 4452.608 kb on + strand, within AO356_19860at 4452.608 kb on + strand, within AO356_19860at 4452.608 kb on + strand, within AO356_19860at 4452.608 kb on + strand, within AO356_19860at 4452.608 kb on + strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.609 kb on - strand, within AO356_19860at 4452.662 kb on + strand, within AO356_19860at 4452.662 kb on + strand, within AO356_19860at 4452.663 kb on - strand, within AO356_19860at 4452.734 kb on + strand, within AO356_19860at 4452.734 kb on + strand, within AO356_19860at 4452.734 kb on + strand, within AO356_19860at 4452.790 kb on + strand, within AO356_19860at 4452.828 kb on - strandat 4452.828 kb on - strandat 4452.828 kb on - strandat 4452.828 kb on - strandat 4452.828 kb on - strandat 4452.922 kb on - strandat 4452.922 kb on - strandat 4452.922 kb on - strandat 4452.986 kb on + strandat 4452.987 kb on - strandat 4453.036 kb on + strandat 4453.037 kb on - strandat 4453.063 kb on - strandat 4453.091 kb on + strandat 4453.092 kb on - strandat 4453.092 kb on - strandat 4453.531 kb on + strand, within AO356_19865at 4453.531 kb on + strand, within AO356_19865at 4453.532 kb on - strand, within AO356_19865at 4453.952 kb on - strand, within AO356_19865at 4453.952 kb on - strand, within AO356_19865at 4453.952 kb on - strand, within AO356_19865at 4454.011 kb on + strand, within AO356_19865at 4454.011 kb on + strand, within AO356_19865at 4454.012 kb on - strand, within AO356_19865at 4454.079 kb on + strand, within AO356_19865at 4454.079 kb on + strand, within AO356_19865at 4454.241 kb on - strand, within AO356_19865at 4454.241 kb on - strand, within AO356_19865at 4454.330 kb on + strand, within AO356_19865at 4454.330 kb on + strand, within AO356_19865at 4454.331 kb on - strand, within AO356_19865at 4454.739 kb on + strandat 4454.814 kb on + strand, within AO356_19870at 4454.814 kb on + strand, within AO356_19870at 4454.873 kb on - strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.090 kb on + strand, within AO356_19870at 4455.091 kb on - strand, within AO356_19870at 4455.091 kb on - strand, within AO356_19870at 4455.091 kb on - strand, within AO356_19870at 4455.091 kb on - strand, within AO356_19870at 4455.091 kb on - strand, within AO356_19870at 4455.091 kb on - strand, within AO356_19870at 4455.091 kb on - strand, within AO356_19870at 4455.092 kb on + strand, within AO356_19870at 4455.092 kb on + strand, within AO356_19870at 4455.093 kb on - strand, within AO356_19870at 4455.350 kb on + strand, within AO356_19870at 4455.351 kb on - strand, within AO356_19870at 4455.381 kb on + strand, within AO356_19870at 4455.382 kb on - strand, within AO356_19870at 4455.414 kb on + strand, within AO356_19870at 4455.415 kb on - strand, within AO356_19870

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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4,452,277 + AO356_19860 0.18 +0.4
4,452,278 - AO356_19860 0.18 +0.5
4,452,278 - AO356_19860 0.18 +1.0
4,452,383 + AO356_19860 0.32 -0.4
4,452,383 + AO356_19860 0.32 -0.1
4,452,384 - AO356_19860 0.32 +0.0
4,452,384 - AO356_19860 0.32 +0.5
4,452,384 - AO356_19860 0.32 +1.2
4,452,398 + AO356_19860 0.34 +0.7
4,452,398 + AO356_19860 0.34 -0.3
4,452,399 - AO356_19860 0.34 -1.6
4,452,451 + AO356_19860 0.41 +0.6
4,452,515 + AO356_19860 0.49 +0.4
4,452,515 + AO356_19860 0.49 -0.1
4,452,515 + AO356_19860 0.49 -0.1
4,452,516 - AO356_19860 0.49 +0.4
4,452,608 + AO356_19860 0.61 +0.2
4,452,608 + AO356_19860 0.61 +0.3
4,452,608 + AO356_19860 0.61 +0.2
4,452,608 + AO356_19860 0.61 -0.8
4,452,608 + AO356_19860 0.61 -0.7
4,452,608 + AO356_19860 0.61 -0.3
4,452,609 - AO356_19860 0.62 +0.6
4,452,609 - AO356_19860 0.62 -0.6
4,452,609 - AO356_19860 0.62 +0.5
4,452,609 - AO356_19860 0.62 +0.9
4,452,609 - AO356_19860 0.62 -0.2
4,452,609 - AO356_19860 0.62 -0.1
4,452,609 - AO356_19860 0.62 +0.5
4,452,609 - AO356_19860 0.62 +0.6
4,452,609 - AO356_19860 0.62 -0.4
4,452,609 - AO356_19860 0.62 -0.2
4,452,662 + AO356_19860 0.69 -0.1
4,452,662 + AO356_19860 0.69 -1.1
4,452,663 - AO356_19860 0.69 +0.9
4,452,734 + AO356_19860 0.78 +0.1
4,452,734 + AO356_19860 0.78 +0.1
4,452,734 + AO356_19860 0.78 +1.3
4,452,790 + AO356_19860 0.85 -0.6
4,452,828 - -0.0
4,452,828 - +1.9
4,452,828 - -0.7
4,452,828 - -0.0
4,452,828 - +0.2
4,452,922 - +0.8
4,452,922 - +0.3
4,452,922 - -0.8
4,452,986 + -0.9
4,452,987 - -0.2
4,453,036 + -0.2
4,453,037 - -0.1
4,453,063 - -0.0
4,453,091 + +0.1
4,453,092 - +1.9
4,453,092 - -1.5
4,453,531 + AO356_19865 0.30 +0.3
4,453,531 + AO356_19865 0.30 -0.0
4,453,532 - AO356_19865 0.31 +0.1
4,453,952 - AO356_19865 0.61 +0.6
4,453,952 - AO356_19865 0.61 +0.9
4,453,952 - AO356_19865 0.61 +0.8
4,454,011 + AO356_19865 0.65 -0.9
4,454,011 + AO356_19865 0.65 -0.7
4,454,012 - AO356_19865 0.65 -1.1
4,454,079 + AO356_19865 0.70 -0.6
4,454,079 + AO356_19865 0.70 -0.2
4,454,241 - AO356_19865 0.82 +0.8
4,454,241 - AO356_19865 0.82 -0.3
4,454,330 + AO356_19865 0.88 +0.9
4,454,330 + AO356_19865 0.88 +0.4
4,454,331 - AO356_19865 0.88 -0.2
4,454,739 + +0.9
4,454,814 + AO356_19870 0.11 -0.4
4,454,814 + AO356_19870 0.11 +0.1
4,454,873 - AO356_19870 0.14 -0.3
4,455,090 + AO356_19870 0.25 +0.3
4,455,090 + AO356_19870 0.25 -0.2
4,455,090 + AO356_19870 0.25 +1.4
4,455,090 + AO356_19870 0.25 -0.2
4,455,090 + AO356_19870 0.25 -0.9
4,455,090 + AO356_19870 0.25 +0.8
4,455,090 + AO356_19870 0.25 +1.2
4,455,090 + AO356_19870 0.25 -0.5
4,455,090 + AO356_19870 0.25 -0.2
4,455,090 + AO356_19870 0.25 -1.1
4,455,091 - AO356_19870 0.25 -0.2
4,455,091 - AO356_19870 0.25 +0.5
4,455,091 - AO356_19870 0.25 +0.6
4,455,091 - AO356_19870 0.25 +0.5
4,455,091 - AO356_19870 0.25 +0.1
4,455,091 - AO356_19870 0.25 +0.2
4,455,091 - AO356_19870 0.25 -1.2
4,455,092 + AO356_19870 0.25 +0.6
4,455,092 + AO356_19870 0.25 +1.0
4,455,093 - AO356_19870 0.25 +0.6
4,455,350 + AO356_19870 0.38 +0.1
4,455,351 - AO356_19870 0.38 -0.9
4,455,381 + AO356_19870 0.39 +0.3
4,455,382 - AO356_19870 0.39 +0.4
4,455,414 + AO356_19870 0.41 -1.1
4,455,415 - AO356_19870 0.41 +0.7

Or see this region's nucleotide sequence