Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12935

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12925 and AO356_12930 are separated by 121 nucleotidesAO356_12930 and AO356_12935 are separated by 241 nucleotidesAO356_12935 and AO356_12940 are separated by 124 nucleotides AO356_12925: AO356_12925 - GntR family transcriptional regulator, at 2,942,275 to 2,942,982 _12925 AO356_12930: AO356_12930 - thioredoxin, at 2,943,104 to 2,943,433 _12930 AO356_12935: AO356_12935 - transcription termination factor Rho, at 2,943,675 to 2,944,934 _12935 AO356_12940: AO356_12940 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 2,945,059 to 2,946,525 _12940 Position (kb) 2943 2944 2945Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2942.813 kb on + strand, within AO356_12925at 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.927 kb on + strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.928 kb on - strandat 2942.931 kb on + strandat 2942.931 kb on + strandat 2942.931 kb on + strandat 2942.931 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.000 kb on + strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.001 kb on - strandat 2943.014 kb on + strandat 2943.431 kb on + strandat 2943.431 kb on + strandat 2943.431 kb on + strandat 2943.431 kb on + strandat 2943.431 kb on + strandat 2943.431 kb on + strandat 2943.431 kb on + strandat 2943.431 kb on + strandat 2943.432 kb on - strandat 2943.432 kb on - strandat 2943.432 kb on - strandat 2943.432 kb on - strandat 2943.432 kb on - strandat 2943.432 kb on - strandat 2943.515 kb on + strandat 2943.515 kb on + strandat 2943.582 kb on + strandat 2943.586 kb on + strandat 2943.586 kb on + strandat 2943.586 kb on + strandat 2943.624 kb on + strandat 2943.637 kb on + strandat 2943.637 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.653 kb on + strandat 2943.661 kb on + strandat 2943.661 kb on + strandat 2943.661 kb on + strandat 2943.672 kb on + strandat 2943.672 kb on + strandat 2944.932 kb on + strandat 2944.932 kb on + strandat 2944.933 kb on - strandat 2944.933 kb on - strandat 2944.933 kb on - strandat 2944.933 kb on - strandat 2944.933 kb on - strandat 2944.981 kb on + strandat 2944.996 kb on + strandat 2944.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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2,942,813 + AO356_12925 0.76 -0.4
2,942,927 + -0.2
2,942,927 + +0.3
2,942,927 + +0.4
2,942,927 + -0.1
2,942,927 + -1.6
2,942,927 + +0.0
2,942,927 + +0.4
2,942,927 + -0.0
2,942,927 + +0.1
2,942,927 + +0.4
2,942,927 + +0.2
2,942,927 + +1.4
2,942,927 + +0.1
2,942,927 + -2.8
2,942,927 + +0.5
2,942,927 + +0.1
2,942,927 + +0.9
2,942,927 + -1.1
2,942,927 + +0.2
2,942,927 + +0.6
2,942,927 + +0.2
2,942,927 + -0.8
2,942,927 + +0.1
2,942,927 + +0.5
2,942,927 + +0.1
2,942,927 + -0.9
2,942,928 - +0.4
2,942,928 - -0.9
2,942,928 - -0.8
2,942,928 - +0.1
2,942,928 - -0.3
2,942,928 - -0.9
2,942,928 - -0.6
2,942,928 - -0.0
2,942,928 - +0.1
2,942,928 - +1.7
2,942,928 - -0.1
2,942,928 - -0.6
2,942,928 - -0.8
2,942,931 + -1.0
2,942,931 + +1.5
2,942,931 + +0.9
2,942,931 + -1.0
2,943,000 + -0.0
2,943,000 + -0.8
2,943,000 + +0.1
2,943,000 + +0.0
2,943,000 + +0.6
2,943,000 + +1.2
2,943,000 + -0.5
2,943,000 + +0.1
2,943,000 + +0.0
2,943,001 - +0.3
2,943,001 - +0.1
2,943,001 - -1.7
2,943,001 - -0.8
2,943,001 - +0.4
2,943,001 - +0.0
2,943,001 - -0.3
2,943,001 - -0.2
2,943,001 - +0.6
2,943,001 - -0.5
2,943,001 - -0.5
2,943,001 - -0.6
2,943,001 - +0.5
2,943,001 - +0.5
2,943,014 + -0.2
2,943,431 + -1.2
2,943,431 + +0.8
2,943,431 + +0.1
2,943,431 + -0.6
2,943,431 + -0.1
2,943,431 + -1.3
2,943,431 + -0.7
2,943,431 + -0.7
2,943,432 - +0.1
2,943,432 - -0.2
2,943,432 - +0.4
2,943,432 - +0.3
2,943,432 - -0.7
2,943,432 - +0.0
2,943,515 + +0.7
2,943,515 + +0.1
2,943,582 + +0.1
2,943,586 + -1.1
2,943,586 + +0.2
2,943,586 + -1.1
2,943,624 + -0.1
2,943,637 + +0.9
2,943,637 + -0.4
2,943,653 + -1.5
2,943,653 + -0.4
2,943,653 + -0.3
2,943,653 + -0.0
2,943,653 + -0.2
2,943,653 + +0.5
2,943,653 + +0.4
2,943,653 + -1.3
2,943,653 + +0.5
2,943,661 + -0.3
2,943,661 + -0.1
2,943,661 + +2.3
2,943,672 + +0.3
2,943,672 + +0.4
2,944,932 + -0.1
2,944,932 + +0.5
2,944,933 - +0.3
2,944,933 - -1.0
2,944,933 - +1.5
2,944,933 - +0.1
2,944,933 - +1.3
2,944,981 + +0.3
2,944,996 + +0.7
2,944,997 - -1.5

Or see this region's nucleotide sequence