Experiment: Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07710 and AO356_07715 overlap by 4 nucleotides AO356_07715 and AO356_07720 overlap by 4 nucleotides AO356_07720 and AO356_07725 are separated by 28 nucleotides
AO356_07710: AO356_07710 - nickel ABC transporter permease, at 1,712,778 to 1,713,635
_07710
AO356_07715: AO356_07715 - methionine ABC transporter ATP-binding protein, at 1,713,632 to 1,714,618
_07715
AO356_07720: AO356_07720 - ABC transporter ATP-binding protein, at 1,714,615 to 1,715,586
_07720
AO356_07725: AO356_07725 - diguanylate cyclase, at 1,715,615 to 1,717,129
_07725
Position (kb)
1714
1715
1716 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1713.987 kb on + strand, within AO356_07715 at 1713.987 kb on + strand, within AO356_07715 at 1713.988 kb on - strand, within AO356_07715 at 1714.045 kb on - strand, within AO356_07715 at 1714.204 kb on - strand, within AO356_07715 at 1714.204 kb on - strand, within AO356_07715 at 1714.322 kb on + strand, within AO356_07715 at 1714.322 kb on + strand, within AO356_07715 at 1714.323 kb on - strand, within AO356_07715 at 1714.323 kb on - strand, within AO356_07715 at 1714.386 kb on - strand, within AO356_07715 at 1714.386 kb on - strand, within AO356_07715 at 1714.388 kb on - strand, within AO356_07715 at 1714.918 kb on + strand, within AO356_07720 at 1714.918 kb on + strand, within AO356_07720 at 1714.919 kb on - strand, within AO356_07720 at 1714.919 kb on - strand, within AO356_07720 at 1714.920 kb on + strand, within AO356_07720 at 1714.920 kb on + strand, within AO356_07720 at 1714.921 kb on - strand, within AO356_07720 at 1715.299 kb on + strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.300 kb on - strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.362 kb on + strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.363 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.365 kb on - strand, within AO356_07720 at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.556 kb on + strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.557 kb on - strand at 1715.601 kb on + strand at 1715.601 kb on + strand at 1715.767 kb on + strand, within AO356_07725 at 1715.768 kb on - strand, within AO356_07725 at 1715.796 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.879 kb on + strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.880 kb on - strand, within AO356_07725 at 1715.881 kb on + strand, within AO356_07725 at 1715.882 kb on - strand, within AO356_07725 at 1715.882 kb on - strand, within AO356_07725 at 1715.892 kb on + strand, within AO356_07725 at 1715.892 kb on + strand, within AO356_07725 at 1715.892 kb on + strand, within AO356_07725 at 1715.893 kb on - strand, within AO356_07725 at 1715.996 kb on + strand, within AO356_07725 at 1715.997 kb on - strand, within AO356_07725 at 1715.997 kb on - strand, within AO356_07725 at 1715.997 kb on - strand, within AO356_07725 at 1716.146 kb on + strand, within AO356_07725 at 1716.146 kb on + strand, within AO356_07725 at 1716.146 kb on + strand, within AO356_07725 at 1716.147 kb on - strand, within AO356_07725 at 1716.147 kb on - strand, within AO356_07725 at 1716.147 kb on - strand, within AO356_07725 at 1716.296 kb on - strand, within AO356_07725 at 1716.296 kb on - strand, within AO356_07725 at 1716.312 kb on + strand, within AO356_07725 at 1716.312 kb on + strand, within AO356_07725 at 1716.393 kb on + strand, within AO356_07725 at 1716.393 kb on + strand, within AO356_07725 at 1716.394 kb on - strand, within AO356_07725 at 1716.394 kb on - strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.468 kb on + strand, within AO356_07725 at 1716.469 kb on - strand, within AO356_07725 at 1716.469 kb on - strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.545 kb on + strand, within AO356_07725 at 1716.551 kb on + strand, within AO356_07725 at 1716.551 kb on + strand, within AO356_07725
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM remove 1,713,987 + AO356_07715 0.36 +0.3 1,713,987 + AO356_07715 0.36 -1.9 1,713,988 - AO356_07715 0.36 -0.0 1,714,045 - AO356_07715 0.42 +0.4 1,714,204 - AO356_07715 0.58 -0.4 1,714,204 - AO356_07715 0.58 -0.8 1,714,322 + AO356_07715 0.70 +0.2 1,714,322 + AO356_07715 0.70 -1.0 1,714,323 - AO356_07715 0.70 -0.3 1,714,323 - AO356_07715 0.70 +0.5 1,714,386 - AO356_07715 0.76 +0.2 1,714,386 - AO356_07715 0.76 +0.2 1,714,388 - AO356_07715 0.77 -0.1 1,714,918 + AO356_07720 0.31 +0.5 1,714,918 + AO356_07720 0.31 -0.9 1,714,919 - AO356_07720 0.31 +0.9 1,714,919 - AO356_07720 0.31 +0.7 1,714,920 + AO356_07720 0.31 +0.2 1,714,920 + AO356_07720 0.31 +0.3 1,714,921 - AO356_07720 0.31 -0.4 1,715,299 + AO356_07720 0.70 +0.1 1,715,300 - AO356_07720 0.70 +0.2 1,715,300 - AO356_07720 0.70 -0.8 1,715,300 - AO356_07720 0.70 -2.6 1,715,362 + AO356_07720 0.77 -0.5 1,715,362 + AO356_07720 0.77 -0.7 1,715,362 + AO356_07720 0.77 -1.6 1,715,362 + AO356_07720 0.77 -0.6 1,715,362 + AO356_07720 0.77 -1.3 1,715,363 - AO356_07720 0.77 -0.4 1,715,363 - AO356_07720 0.77 -1.2 1,715,363 - AO356_07720 0.77 -1.2 1,715,365 - AO356_07720 0.77 -1.2 1,715,365 - AO356_07720 0.77 -0.7 1,715,365 - AO356_07720 0.77 +0.8 1,715,556 + +0.3 1,715,556 + -0.3 1,715,556 + -0.6 1,715,556 + +0.3 1,715,556 + +1.0 1,715,556 + +0.4 1,715,556 + +0.5 1,715,556 + -0.7 1,715,556 + -1.6 1,715,557 - -0.5 1,715,557 - +0.5 1,715,557 - -0.0 1,715,557 - +0.1 1,715,557 - +0.2 1,715,557 - -0.2 1,715,557 - +0.3 1,715,557 - -0.6 1,715,557 - -0.7 1,715,557 - -0.3 1,715,557 - -0.3 1,715,601 + +0.1 1,715,601 + +0.4 1,715,767 + AO356_07725 0.10 +1.1 1,715,768 - AO356_07725 0.10 +0.2 1,715,796 + AO356_07725 0.12 +0.3 1,715,879 + AO356_07725 0.17 +0.3 1,715,879 + AO356_07725 0.17 -0.4 1,715,879 + AO356_07725 0.17 +1.2 1,715,879 + AO356_07725 0.17 -1.2 1,715,879 + AO356_07725 0.17 +0.1 1,715,880 - AO356_07725 0.17 +0.4 1,715,880 - AO356_07725 0.17 -0.2 1,715,880 - AO356_07725 0.17 -0.4 1,715,880 - AO356_07725 0.17 +0.6 1,715,880 - AO356_07725 0.17 -0.3 1,715,880 - AO356_07725 0.17 -1.4 1,715,880 - AO356_07725 0.17 -0.3 1,715,880 - AO356_07725 0.17 -0.5 1,715,881 + AO356_07725 0.18 -0.2 1,715,882 - AO356_07725 0.18 -0.8 1,715,882 - AO356_07725 0.18 -0.3 1,715,892 + AO356_07725 0.18 +2.2 1,715,892 + AO356_07725 0.18 -1.1 1,715,892 + AO356_07725 0.18 +0.7 1,715,893 - AO356_07725 0.18 -0.7 1,715,996 + AO356_07725 0.25 -0.2 1,715,997 - AO356_07725 0.25 -0.3 1,715,997 - AO356_07725 0.25 +0.3 1,715,997 - AO356_07725 0.25 -0.1 1,716,146 + AO356_07725 0.35 +0.2 1,716,146 + AO356_07725 0.35 -0.7 1,716,146 + AO356_07725 0.35 +0.7 1,716,147 - AO356_07725 0.35 +0.6 1,716,147 - AO356_07725 0.35 -0.2 1,716,147 - AO356_07725 0.35 +0.5 1,716,296 - AO356_07725 0.45 +0.4 1,716,296 - AO356_07725 0.45 +0.0 1,716,312 + AO356_07725 0.46 +0.6 1,716,312 + AO356_07725 0.46 -0.8 1,716,393 + AO356_07725 0.51 +0.2 1,716,393 + AO356_07725 0.51 +0.3 1,716,394 - AO356_07725 0.51 -0.2 1,716,394 - AO356_07725 0.51 -0.8 1,716,468 + AO356_07725 0.56 -1.1 1,716,468 + AO356_07725 0.56 -0.4 1,716,468 + AO356_07725 0.56 +0.5 1,716,469 - AO356_07725 0.56 +0.1 1,716,469 - AO356_07725 0.56 +0.2 1,716,545 + AO356_07725 0.61 -0.8 1,716,545 + AO356_07725 0.61 +2.1 1,716,545 + AO356_07725 0.61 +0.3 1,716,551 + AO356_07725 0.62 -0.2 1,716,551 + AO356_07725 0.62 -0.2
Or see this region's nucleotide sequence