Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06110

Experiment: Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06100 and AO356_06105 are separated by 161 nucleotidesAO356_06105 and AO356_06110 are separated by 234 nucleotidesAO356_06110 and AO356_06115 are separated by 187 nucleotidesAO356_06115 and AO356_06120 are separated by 94 nucleotides AO356_06100: AO356_06100 - hypothetical protein, at 1,353,320 to 1,353,697 _06100 AO356_06105: AO356_06105 - cold-shock protein, at 1,353,859 to 1,354,068 _06105 AO356_06110: AO356_06110 - glycerol-3-phosphate O-acyltransferase, at 1,354,303 to 1,356,801 _06110 AO356_06115: AO356_06115 - hypothetical protein, at 1,356,989 to 1,357,360 _06115 AO356_06120: AO356_06120 - hypothetical protein, at 1,357,455 to 1,357,850 _06120 Position (kb) 1354 1355 1356 1357Strain fitness (log2 ratio) -3 -2 -1 0 1at 1353.344 kb on + strandat 1353.344 kb on + strandat 1353.345 kb on - strandat 1353.423 kb on + strand, within AO356_06100at 1353.440 kb on + strand, within AO356_06100at 1353.441 kb on - strand, within AO356_06100at 1353.441 kb on - strand, within AO356_06100at 1353.510 kb on - strand, within AO356_06100at 1353.718 kb on + strandat 1353.718 kb on + strandat 1353.773 kb on + strandat 1353.773 kb on + strandat 1353.773 kb on + strandat 1353.774 kb on - strandat 1353.774 kb on - strandat 1353.774 kb on - strandat 1353.774 kb on - strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.839 kb on + strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.840 kb on - strandat 1353.842 kb on + strandat 1353.842 kb on + strandat 1353.842 kb on + strandat 1353.842 kb on + strandat 1353.843 kb on - strandat 1353.843 kb on - strandat 1353.843 kb on - strandat 1353.860 kb on + strandat 1353.860 kb on + strandat 1353.860 kb on + strandat 1353.860 kb on + strandat 1353.861 kb on - strandat 1353.861 kb on - strandat 1353.861 kb on - strandat 1353.915 kb on - strand, within AO356_06105at 1354.016 kb on + strand, within AO356_06105at 1354.088 kb on - strandat 1354.092 kb on + strandat 1354.093 kb on - strandat 1354.093 kb on - strandat 1354.093 kb on - strandat 1354.094 kb on + strandat 1354.094 kb on + strandat 1354.094 kb on + strandat 1354.094 kb on + strandat 1354.094 kb on + strandat 1354.095 kb on - strandat 1354.095 kb on - strandat 1354.095 kb on - strandat 1354.095 kb on - strandat 1354.178 kb on + strandat 1354.179 kb on - strandat 1354.179 kb on - strandat 1354.179 kb on - strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.181 kb on - strandat 1354.181 kb on - strandat 1354.181 kb on - strandat 1354.181 kb on - strandat 1354.181 kb on - strandat 1354.181 kb on - strandat 1354.211 kb on + strandat 1354.212 kb on - strandat 1354.212 kb on - strandat 1354.254 kb on + strandat 1354.255 kb on - strandat 1354.255 kb on - strandat 1354.281 kb on + strandat 1354.303 kb on - strandat 1354.303 kb on - strandat 1354.357 kb on + strandat 1354.357 kb on + strandat 1354.357 kb on + strandat 1354.358 kb on - strandat 1354.358 kb on - strandat 1354.358 kb on - strandat 1354.358 kb on - strandat 1354.358 kb on - strandat 1354.358 kb on - strandat 1354.398 kb on + strandat 1354.432 kb on + strandat 1354.432 kb on + strandat 1354.432 kb on + strandat 1354.432 kb on + strandat 1354.433 kb on - strandat 1354.433 kb on - strandat 1354.433 kb on - strandat 1354.559 kb on - strand, within AO356_06110at 1354.614 kb on + strand, within AO356_06110at 1354.615 kb on - strand, within AO356_06110at 1354.615 kb on - strand, within AO356_06110at 1355.093 kb on - strand, within AO356_06110at 1355.098 kb on + strand, within AO356_06110at 1355.098 kb on + strand, within AO356_06110at 1355.098 kb on + strand, within AO356_06110at 1355.099 kb on - strand, within AO356_06110at 1355.099 kb on - strand, within AO356_06110at 1355.152 kb on + strand, within AO356_06110at 1355.152 kb on + strand, within AO356_06110at 1355.152 kb on + strand, within AO356_06110at 1355.152 kb on + strand, within AO356_06110at 1355.152 kb on + strand, within AO356_06110at 1355.152 kb on + strand, within AO356_06110at 1355.153 kb on - strand, within AO356_06110at 1355.153 kb on - strand, within AO356_06110at 1355.153 kb on - strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.218 kb on + strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.219 kb on - strand, within AO356_06110at 1355.248 kb on + strand, within AO356_06110at 1355.263 kb on + strand, within AO356_06110at 1355.264 kb on - strand, within AO356_06110at 1355.264 kb on - strand, within AO356_06110at 1355.264 kb on - strand, within AO356_06110at 1355.399 kb on - strand, within AO356_06110at 1355.420 kb on - strand, within AO356_06110at 1355.458 kb on + strand, within AO356_06110at 1355.459 kb on - strand, within AO356_06110at 1355.581 kb on + strand, within AO356_06110at 1355.581 kb on + strand, within AO356_06110at 1355.581 kb on + strand, within AO356_06110at 1355.582 kb on - strand, within AO356_06110at 1355.582 kb on - strand, within AO356_06110at 1355.582 kb on - strand, within AO356_06110at 1355.591 kb on - strand, within AO356_06110at 1355.591 kb on - strand, within AO356_06110at 1355.617 kb on + strand, within AO356_06110at 1355.618 kb on - strand, within AO356_06110at 1355.618 kb on - strand, within AO356_06110at 1355.618 kb on - strand, within AO356_06110at 1355.969 kb on - strand, within AO356_06110at 1356.136 kb on + strand, within AO356_06110at 1356.136 kb on + strand, within AO356_06110at 1356.136 kb on + strand, within AO356_06110at 1356.136 kb on + strand, within AO356_06110at 1356.136 kb on + strand, within AO356_06110at 1356.137 kb on - strand, within AO356_06110at 1356.137 kb on - strand, within AO356_06110at 1356.137 kb on - strand, within AO356_06110at 1356.137 kb on - strand, within AO356_06110at 1356.236 kb on - strand, within AO356_06110at 1356.250 kb on + strand, within AO356_06110at 1356.370 kb on + strand, within AO356_06110at 1356.371 kb on - strand, within AO356_06110at 1356.371 kb on - strand, within AO356_06110at 1356.454 kb on + strand, within AO356_06110at 1356.454 kb on + strand, within AO356_06110at 1356.454 kb on + strand, within AO356_06110at 1356.454 kb on + strand, within AO356_06110at 1356.454 kb on + strand, within AO356_06110at 1356.454 kb on + strand, within AO356_06110at 1356.454 kb on + strand, within AO356_06110at 1356.455 kb on - strand, within AO356_06110at 1356.455 kb on - strand, within AO356_06110at 1356.455 kb on - strand, within AO356_06110at 1356.455 kb on - strand, within AO356_06110at 1356.664 kb on + strandat 1356.665 kb on - strandat 1356.665 kb on - strandat 1356.868 kb on + strandat 1356.869 kb on - strandat 1356.869 kb on - strandat 1356.869 kb on - strandat 1356.918 kb on + strandat 1356.919 kb on - strandat 1356.919 kb on - strandat 1356.943 kb on + strandat 1356.944 kb on - strandat 1356.944 kb on - strandat 1356.970 kb on + strandat 1356.970 kb on + strandat 1356.970 kb on + strandat 1356.971 kb on - strandat 1356.971 kb on - strandat 1357.029 kb on - strand, within AO356_06115at 1357.195 kb on + strand, within AO356_06115at 1357.220 kb on + strand, within AO356_06115at 1357.221 kb on - strand, within AO356_06115at 1357.221 kb on - strand, within AO356_06115at 1357.400 kb on + strandat 1357.548 kb on + strand, within AO356_06120at 1357.549 kb on - strand, within AO356_06120at 1357.549 kb on - strand, within AO356_06120at 1357.549 kb on - strand, within AO356_06120at 1357.549 kb on - strand, within AO356_06120at 1357.549 kb on - strand, within AO356_06120at 1357.580 kb on + strand, within AO356_06120at 1357.580 kb on + strand, within AO356_06120at 1357.580 kb on + strand, within AO356_06120at 1357.581 kb on - strand, within AO356_06120at 1357.692 kb on + strand, within AO356_06120at 1357.692 kb on + strand, within AO356_06120at 1357.693 kb on - strand, within AO356_06120at 1357.693 kb on - strand, within AO356_06120at 1357.693 kb on - strand, within AO356_06120at 1357.693 kb on - strand, within AO356_06120at 1357.693 kb on - strand, within AO356_06120at 1357.725 kb on + strand, within AO356_06120

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
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1,353,344 + +0.7
1,353,344 + +0.6
1,353,345 - +0.5
1,353,423 + AO356_06100 0.27 -0.8
1,353,440 + AO356_06100 0.32 -1.4
1,353,441 - AO356_06100 0.32 +0.7
1,353,441 - AO356_06100 0.32 +0.4
1,353,510 - AO356_06100 0.50 -0.2
1,353,718 + -0.0
1,353,718 + -1.3
1,353,773 + -2.6
1,353,773 + -1.1
1,353,773 + +0.3
1,353,774 - +0.2
1,353,774 - -0.1
1,353,774 - +0.9
1,353,774 - -0.0
1,353,839 + -0.7
1,353,839 + -1.1
1,353,839 + -0.3
1,353,839 + -0.8
1,353,839 + +0.4
1,353,839 + -0.5
1,353,839 + -0.9
1,353,839 + +0.2
1,353,839 + -0.1
1,353,839 + +0.5
1,353,839 + -2.6
1,353,839 + +1.6
1,353,839 + -0.7
1,353,839 + +1.6
1,353,839 + +0.9
1,353,839 + +0.2
1,353,840 - -0.4
1,353,840 - +0.4
1,353,840 - +1.2
1,353,840 - +0.5
1,353,840 - -0.2
1,353,840 - -1.1
1,353,840 - -2.0
1,353,840 - -0.1
1,353,840 - +0.9
1,353,840 - +0.0
1,353,842 + -1.0
1,353,842 + +0.5
1,353,842 + -1.7
1,353,842 + -0.1
1,353,843 - +0.4
1,353,843 - -0.3
1,353,843 - +0.2
1,353,860 + +0.2
1,353,860 + +0.6
1,353,860 + +1.4
1,353,860 + -0.4
1,353,861 - -1.1
1,353,861 - -0.6
1,353,861 - +0.6
1,353,915 - AO356_06105 0.27 -0.0
1,354,016 + AO356_06105 0.75 +0.6
1,354,088 - -1.9
1,354,092 + +1.3
1,354,093 - +0.6
1,354,093 - -0.7
1,354,093 - +0.6
1,354,094 + +0.8
1,354,094 + +1.0
1,354,094 + -1.4
1,354,094 + +0.5
1,354,094 + -0.1
1,354,095 - -1.4
1,354,095 - +0.4
1,354,095 - -1.3
1,354,095 - -0.2
1,354,178 + +1.0
1,354,179 - +0.5
1,354,179 - -0.9
1,354,179 - +0.3
1,354,180 + +0.1
1,354,180 + -0.8
1,354,180 + +0.1
1,354,180 + +0.8
1,354,180 + +0.9
1,354,180 + +0.4
1,354,180 + -0.2
1,354,180 + -0.7
1,354,181 - +0.2
1,354,181 - -0.6
1,354,181 - -0.7
1,354,181 - -0.3
1,354,181 - -0.1
1,354,181 - +0.3
1,354,211 + +0.4
1,354,212 - -0.3
1,354,212 - +0.7
1,354,254 + +0.1
1,354,255 - +0.8
1,354,255 - -2.2
1,354,281 + -0.5
1,354,303 - -0.6
1,354,303 - +0.8
1,354,357 + +0.4
1,354,357 + -0.4
1,354,357 + -0.3
1,354,358 - +0.6
1,354,358 - -0.7
1,354,358 - -0.0
1,354,358 - -0.2
1,354,358 - -0.7
1,354,358 - +1.3
1,354,398 + -0.2
1,354,432 + +0.9
1,354,432 + +0.2
1,354,432 + -0.4
1,354,432 + +0.2
1,354,433 - -0.9
1,354,433 - +0.2
1,354,433 - +0.3
1,354,559 - AO356_06110 0.10 -0.4
1,354,614 + AO356_06110 0.12 +0.1
1,354,615 - AO356_06110 0.12 -0.1
1,354,615 - AO356_06110 0.12 +0.1
1,355,093 - AO356_06110 0.32 -0.4
1,355,098 + AO356_06110 0.32 -0.6
1,355,098 + AO356_06110 0.32 +0.4
1,355,098 + AO356_06110 0.32 -0.8
1,355,099 - AO356_06110 0.32 -0.5
1,355,099 - AO356_06110 0.32 -1.1
1,355,152 + AO356_06110 0.34 +0.0
1,355,152 + AO356_06110 0.34 +0.5
1,355,152 + AO356_06110 0.34 +0.5
1,355,152 + AO356_06110 0.34 -0.8
1,355,152 + AO356_06110 0.34 -0.1
1,355,152 + AO356_06110 0.34 -1.2
1,355,153 - AO356_06110 0.34 +0.7
1,355,153 - AO356_06110 0.34 +0.2
1,355,153 - AO356_06110 0.34 +0.7
1,355,218 + AO356_06110 0.37 -0.0
1,355,218 + AO356_06110 0.37 -0.8
1,355,218 + AO356_06110 0.37 -0.1
1,355,218 + AO356_06110 0.37 +0.6
1,355,218 + AO356_06110 0.37 +0.3
1,355,218 + AO356_06110 0.37 -0.3
1,355,218 + AO356_06110 0.37 -0.0
1,355,218 + AO356_06110 0.37 -0.1
1,355,218 + AO356_06110 0.37 -0.6
1,355,218 + AO356_06110 0.37 +0.6
1,355,218 + AO356_06110 0.37 -0.1
1,355,218 + AO356_06110 0.37 -0.1
1,355,218 + AO356_06110 0.37 +0.2
1,355,218 + AO356_06110 0.37 +0.2
1,355,218 + AO356_06110 0.37 -2.8
1,355,219 - AO356_06110 0.37 +1.4
1,355,219 - AO356_06110 0.37 +0.5
1,355,219 - AO356_06110 0.37 -0.1
1,355,219 - AO356_06110 0.37 -0.5
1,355,219 - AO356_06110 0.37 -0.9
1,355,219 - AO356_06110 0.37 -0.5
1,355,219 - AO356_06110 0.37 -0.8
1,355,219 - AO356_06110 0.37 +0.3
1,355,219 - AO356_06110 0.37 -0.1
1,355,219 - AO356_06110 0.37 +1.2
1,355,219 - AO356_06110 0.37 -0.9
1,355,248 + AO356_06110 0.38 -0.1
1,355,263 + AO356_06110 0.38 -0.5
1,355,264 - AO356_06110 0.38 +1.4
1,355,264 - AO356_06110 0.38 +0.1
1,355,264 - AO356_06110 0.38 +0.6
1,355,399 - AO356_06110 0.44 -0.8
1,355,420 - AO356_06110 0.45 -0.4
1,355,458 + AO356_06110 0.46 -0.2
1,355,459 - AO356_06110 0.46 +0.5
1,355,581 + AO356_06110 0.51 -0.9
1,355,581 + AO356_06110 0.51 +0.5
1,355,581 + AO356_06110 0.51 +0.1
1,355,582 - AO356_06110 0.51 -1.1
1,355,582 - AO356_06110 0.51 +0.6
1,355,582 - AO356_06110 0.51 -0.5
1,355,591 - AO356_06110 0.52 +0.0
1,355,591 - AO356_06110 0.52 -0.2
1,355,617 + AO356_06110 0.53 -0.4
1,355,618 - AO356_06110 0.53 -0.3
1,355,618 - AO356_06110 0.53 -0.3
1,355,618 - AO356_06110 0.53 +0.6
1,355,969 - AO356_06110 0.67 +0.2
1,356,136 + AO356_06110 0.73 -1.3
1,356,136 + AO356_06110 0.73 +0.1
1,356,136 + AO356_06110 0.73 -1.1
1,356,136 + AO356_06110 0.73 +0.1
1,356,136 + AO356_06110 0.73 +0.1
1,356,137 - AO356_06110 0.73 -0.3
1,356,137 - AO356_06110 0.73 -0.7
1,356,137 - AO356_06110 0.73 +1.3
1,356,137 - AO356_06110 0.73 -1.9
1,356,236 - AO356_06110 0.77 +1.2
1,356,250 + AO356_06110 0.78 -1.2
1,356,370 + AO356_06110 0.83 -0.3
1,356,371 - AO356_06110 0.83 +0.3
1,356,371 - AO356_06110 0.83 +0.6
1,356,454 + AO356_06110 0.86 -0.7
1,356,454 + AO356_06110 0.86 +0.8
1,356,454 + AO356_06110 0.86 -1.1
1,356,454 + AO356_06110 0.86 -0.1
1,356,454 + AO356_06110 0.86 +0.0
1,356,454 + AO356_06110 0.86 -0.0
1,356,454 + AO356_06110 0.86 +0.7
1,356,455 - AO356_06110 0.86 -1.6
1,356,455 - AO356_06110 0.86 -0.3
1,356,455 - AO356_06110 0.86 -0.1
1,356,455 - AO356_06110 0.86 +0.5
1,356,664 + -1.7
1,356,665 - +0.4
1,356,665 - -0.5
1,356,868 + +0.7
1,356,869 - -1.1
1,356,869 - +0.6
1,356,869 - -0.1
1,356,918 + +1.1
1,356,919 - -0.4
1,356,919 - -0.2
1,356,943 + +0.4
1,356,944 - +0.2
1,356,944 - -0.8
1,356,970 + +0.4
1,356,970 + +0.9
1,356,970 + -0.1
1,356,971 - -0.7
1,356,971 - -0.7
1,357,029 - AO356_06115 0.11 -0.5
1,357,195 + AO356_06115 0.55 -2.8
1,357,220 + AO356_06115 0.62 -0.8
1,357,221 - AO356_06115 0.62 -0.6
1,357,221 - AO356_06115 0.62 -0.3
1,357,400 + -0.1
1,357,548 + AO356_06120 0.23 -1.1
1,357,549 - AO356_06120 0.24 +1.0
1,357,549 - AO356_06120 0.24 +0.0
1,357,549 - AO356_06120 0.24 -0.7
1,357,549 - AO356_06120 0.24 -0.4
1,357,549 - AO356_06120 0.24 +1.3
1,357,580 + AO356_06120 0.32 +0.3
1,357,580 + AO356_06120 0.32 -1.0
1,357,580 + AO356_06120 0.32 -1.6
1,357,581 - AO356_06120 0.32 -1.2
1,357,692 + AO356_06120 0.60 -1.2
1,357,692 + AO356_06120 0.60 +0.2
1,357,693 - AO356_06120 0.60 +0.9
1,357,693 - AO356_06120 0.60 +0.5
1,357,693 - AO356_06120 0.60 -0.1
1,357,693 - AO356_06120 0.60 +1.6
1,357,693 - AO356_06120 0.60 -2.0
1,357,725 + AO356_06120 0.68 -0.8

Or see this region's nucleotide sequence