Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04340

Experiment: Nickel (II) chloride 0.625 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_04330 and AO356_04335 overlap by 4 nucleotidesAO356_04335 and AO356_04340 are separated by 64 nucleotidesAO356_04340 and AO356_04345 are separated by 318 nucleotidesAO356_04345 and AO356_04350 are separated by 12 nucleotides AO356_04330: AO356_04330 - allophanate hydrolase, at 986,132 to 986,836 _04330 AO356_04335: AO356_04335 - hypothetical protein, at 986,833 to 987,585 _04335 AO356_04340: AO356_04340 - MFS transporter, at 987,650 to 988,936 _04340 AO356_04345: AO356_04345 - hypothetical protein, at 989,255 to 989,797 _04345 AO356_04350: AO356_04350 - glutamine amidotransferase, at 989,810 to 990,586 _04350 Position (kb) 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 986.664 kb on + strand, within AO356_04330at 986.664 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.919 kb on + strand, within AO356_04335at 986.919 kb on + strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 987.108 kb on - strand, within AO356_04335at 987.179 kb on + strand, within AO356_04335at 987.180 kb on - strand, within AO356_04335at 987.239 kb on + strand, within AO356_04335at 987.239 kb on + strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.240 kb on - strand, within AO356_04335at 987.263 kb on + strand, within AO356_04335at 987.317 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.350 kb on + strand, within AO356_04335at 987.351 kb on - strand, within AO356_04335at 987.351 kb on - strand, within AO356_04335at 987.390 kb on - strand, within AO356_04335at 987.572 kb on - strandat 987.601 kb on - strandat 987.617 kb on + strandat 987.617 kb on + strandat 987.644 kb on + strandat 987.651 kb on + strandat 987.652 kb on - strandat 987.652 kb on - strandat 987.717 kb on + strandat 987.775 kb on + strandat 987.776 kb on - strandat 987.823 kb on - strand, within AO356_04340at 987.823 kb on - strand, within AO356_04340at 987.947 kb on - strand, within AO356_04340at 987.967 kb on + strand, within AO356_04340at 987.968 kb on - strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.969 kb on + strand, within AO356_04340at 987.970 kb on - strand, within AO356_04340at 987.970 kb on - strand, within AO356_04340at 987.970 kb on - strand, within AO356_04340at 988.003 kb on - strand, within AO356_04340at 988.003 kb on - strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.044 kb on + strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.045 kb on - strand, within AO356_04340at 988.059 kb on + strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.060 kb on - strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.068 kb on + strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.069 kb on - strand, within AO356_04340at 988.112 kb on + strand, within AO356_04340at 988.112 kb on + strand, within AO356_04340at 988.112 kb on + strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.113 kb on - strand, within AO356_04340at 988.167 kb on + strand, within AO356_04340at 988.167 kb on + strand, within AO356_04340at 988.168 kb on - strand, within AO356_04340at 988.293 kb on + strand, within AO356_04340at 988.293 kb on + strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.294 kb on - strand, within AO356_04340at 988.413 kb on + strand, within AO356_04340at 988.414 kb on - strand, within AO356_04340at 988.581 kb on + strand, within AO356_04340at 988.582 kb on - strand, within AO356_04340at 988.582 kb on - strand, within AO356_04340at 988.955 kb on + strandat 988.955 kb on + strandat 988.955 kb on + strandat 988.955 kb on + strandat 988.956 kb on - strandat 988.956 kb on - strandat 988.956 kb on - strandat 989.036 kb on - strandat 989.145 kb on + strandat 989.145 kb on + strandat 989.145 kb on + strandat 989.145 kb on + strandat 989.146 kb on - strandat 989.146 kb on - strandat 989.146 kb on - strandat 989.146 kb on - strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.160 kb on + strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.161 kb on - strandat 989.180 kb on + strandat 989.180 kb on + strandat 989.181 kb on - strandat 989.181 kb on - strandat 989.181 kb on - strandat 989.219 kb on + strandat 989.220 kb on - strandat 989.220 kb on - strandat 989.421 kb on + strand, within AO356_04345at 989.493 kb on + strand, within AO356_04345at 989.493 kb on + strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.494 kb on - strand, within AO356_04345at 989.716 kb on - strand, within AO356_04345at 989.780 kb on + strandat 989.780 kb on + strandat 989.781 kb on - strandat 989.781 kb on - strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.784 kb on + strandat 989.785 kb on - strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.797 kb on + strandat 989.798 kb on - strandat 989.798 kb on - strandat 989.798 kb on - strandat 989.811 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.625 mM
remove
986,664 + AO356_04330 0.75 +0.6
986,664 + AO356_04330 0.75 -0.2
986,685 + AO356_04330 0.78 -0.4
986,685 + AO356_04330 0.78 -0.5
986,685 + AO356_04330 0.78 +0.1
986,919 + AO356_04335 0.11 -0.5
986,919 + AO356_04335 0.11 -0.1
986,920 - AO356_04335 0.12 -0.6
986,920 - AO356_04335 0.12 -0.3
986,920 - AO356_04335 0.12 +2.6
986,920 - AO356_04335 0.12 +0.3
986,920 - AO356_04335 0.12 -0.6
987,108 - AO356_04335 0.37 +0.1
987,179 + AO356_04335 0.46 -0.4
987,180 - AO356_04335 0.46 -0.2
987,239 + AO356_04335 0.54 -0.2
987,239 + AO356_04335 0.54 +0.2
987,240 - AO356_04335 0.54 +0.6
987,240 - AO356_04335 0.54 -1.1
987,240 - AO356_04335 0.54 +1.2
987,263 + AO356_04335 0.57 -0.1
987,317 + AO356_04335 0.64 +1.6
987,350 + AO356_04335 0.69 -1.2
987,350 + AO356_04335 0.69 -0.4
987,350 + AO356_04335 0.69 +0.1
987,350 + AO356_04335 0.69 -0.2
987,351 - AO356_04335 0.69 +0.9
987,351 - AO356_04335 0.69 +1.4
987,390 - AO356_04335 0.74 +0.2
987,572 - -0.9
987,601 - -0.4
987,617 + +0.0
987,617 + +0.2
987,644 + -0.4
987,651 + -0.0
987,652 - -0.5
987,652 - +0.3
987,717 + +0.4
987,775 + -1.4
987,776 - +0.2
987,823 - AO356_04340 0.13 +1.0
987,823 - AO356_04340 0.13 +0.4
987,947 - AO356_04340 0.23 -0.2
987,967 + AO356_04340 0.25 -0.0
987,968 - AO356_04340 0.25 +0.2
987,969 + AO356_04340 0.25 +0.7
987,969 + AO356_04340 0.25 +0.6
987,969 + AO356_04340 0.25 -1.0
987,969 + AO356_04340 0.25 +1.3
987,969 + AO356_04340 0.25 +0.1
987,969 + AO356_04340 0.25 +0.7
987,970 - AO356_04340 0.25 +0.0
987,970 - AO356_04340 0.25 -0.2
987,970 - AO356_04340 0.25 -0.7
988,003 - AO356_04340 0.27 -0.8
988,003 - AO356_04340 0.27 +1.6
988,044 + AO356_04340 0.31 +0.2
988,044 + AO356_04340 0.31 +0.3
988,044 + AO356_04340 0.31 +0.6
988,044 + AO356_04340 0.31 -0.1
988,045 - AO356_04340 0.31 -2.1
988,045 - AO356_04340 0.31 +1.2
988,045 - AO356_04340 0.31 -0.5
988,045 - AO356_04340 0.31 -0.4
988,059 + AO356_04340 0.32 +0.1
988,060 - AO356_04340 0.32 +1.2
988,060 - AO356_04340 0.32 +1.1
988,060 - AO356_04340 0.32 -0.2
988,060 - AO356_04340 0.32 +1.0
988,060 - AO356_04340 0.32 +1.2
988,060 - AO356_04340 0.32 -0.2
988,060 - AO356_04340 0.32 -1.6
988,060 - AO356_04340 0.32 -0.2
988,060 - AO356_04340 0.32 +0.6
988,068 + AO356_04340 0.32 -0.2
988,068 + AO356_04340 0.32 +0.4
988,068 + AO356_04340 0.32 -0.5
988,068 + AO356_04340 0.32 +1.3
988,069 - AO356_04340 0.33 -0.5
988,069 - AO356_04340 0.33 +0.7
988,069 - AO356_04340 0.33 -2.2
988,069 - AO356_04340 0.33 -1.2
988,069 - AO356_04340 0.33 +0.8
988,069 - AO356_04340 0.33 +0.0
988,112 + AO356_04340 0.36 -0.0
988,112 + AO356_04340 0.36 +0.2
988,112 + AO356_04340 0.36 -0.7
988,113 - AO356_04340 0.36 +0.8
988,113 - AO356_04340 0.36 -0.5
988,113 - AO356_04340 0.36 +0.2
988,113 - AO356_04340 0.36 +0.5
988,113 - AO356_04340 0.36 -1.1
988,167 + AO356_04340 0.40 -0.5
988,167 + AO356_04340 0.40 -1.1
988,168 - AO356_04340 0.40 -0.6
988,293 + AO356_04340 0.50 +0.4
988,293 + AO356_04340 0.50 +1.5
988,294 - AO356_04340 0.50 +0.4
988,294 - AO356_04340 0.50 +1.0
988,294 - AO356_04340 0.50 +1.2
988,294 - AO356_04340 0.50 +0.9
988,294 - AO356_04340 0.50 +0.7
988,294 - AO356_04340 0.50 -0.1
988,294 - AO356_04340 0.50 +0.1
988,413 + AO356_04340 0.59 +0.2
988,414 - AO356_04340 0.59 -0.0
988,581 + AO356_04340 0.72 -0.1
988,582 - AO356_04340 0.72 -3.2
988,582 - AO356_04340 0.72 +0.9
988,955 + -0.5
988,955 + -0.4
988,955 + +0.3
988,955 + +0.2
988,956 - -0.4
988,956 - +1.1
988,956 - -0.2
989,036 - -0.0
989,145 + +0.4
989,145 + +0.7
989,145 + -0.1
989,145 + +0.0
989,146 - -0.4
989,146 - -1.3
989,146 - -0.0
989,146 - -0.1
989,160 + +0.6
989,160 + +0.1
989,160 + +0.7
989,160 + -0.5
989,160 + -1.0
989,160 + +0.4
989,160 + +0.5
989,160 + +0.5
989,160 + +0.9
989,160 + +0.4
989,160 + -0.6
989,160 + -0.4
989,161 - -0.4
989,161 - -0.8
989,161 - +0.4
989,161 - +0.2
989,161 - +0.3
989,161 - -0.3
989,180 + +0.5
989,180 + +0.3
989,181 - +0.2
989,181 - +0.3
989,181 - +0.1
989,219 + +1.0
989,220 - +0.1
989,220 - +0.6
989,421 + AO356_04345 0.31 +0.4
989,493 + AO356_04345 0.44 -0.6
989,493 + AO356_04345 0.44 -0.3
989,494 - AO356_04345 0.44 -0.9
989,494 - AO356_04345 0.44 +0.5
989,494 - AO356_04345 0.44 -2.2
989,494 - AO356_04345 0.44 +0.0
989,716 - AO356_04345 0.85 -1.6
989,780 + +0.1
989,780 + -0.2
989,781 - -1.4
989,781 - +1.0
989,784 + -1.0
989,784 + -0.5
989,784 + -0.4
989,784 + -0.4
989,784 + -0.4
989,785 - +0.1
989,797 + -1.4
989,797 + -2.1
989,797 + -0.6
989,797 + -0.5
989,797 + -1.8
989,798 - -1.4
989,798 - -1.9
989,798 - -0.0
989,811 + -1.1

Or see this region's nucleotide sequence