Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004154

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004152 and ABIE53_004153 overlap by 8 nucleotidesABIE53_004153 and ABIE53_004154 are separated by 225 nucleotidesABIE53_004154 and ABIE53_004155 overlap by 4 nucleotides ABIE53_004152: ABIE53_004152 - hypothetical protein, at 322,318 to 322,476 _004152 ABIE53_004153: ABIE53_004153 - putative amidohydrolase, at 322,469 to 323,176 _004153 ABIE53_004154: ABIE53_004154 - ATP-dependent Lhr-like helicase, at 323,402 to 326,059 _004154 ABIE53_004155: ABIE53_004155 - DNA ligase-associated metallophosphoesterase, at 326,056 to 326,718 _004155 Position (kb) 323 324 325 326 327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.560 kb on + strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.561 kb on - strand, within ABIE53_004153at 322.567 kb on + strand, within ABIE53_004153at 322.567 kb on + strand, within ABIE53_004153at 322.567 kb on + strand, within ABIE53_004153at 322.567 kb on + strand, within ABIE53_004153at 322.611 kb on + strand, within ABIE53_004153at 322.643 kb on + strand, within ABIE53_004153at 322.643 kb on + strand, within ABIE53_004153at 322.643 kb on + strand, within ABIE53_004153at 322.644 kb on - strand, within ABIE53_004153at 322.644 kb on - strand, within ABIE53_004153at 322.644 kb on - strand, within ABIE53_004153at 322.644 kb on - strand, within ABIE53_004153at 322.644 kb on - strand, within ABIE53_004153at 322.704 kb on + strand, within ABIE53_004153at 322.705 kb on - strand, within ABIE53_004153at 322.770 kb on + strand, within ABIE53_004153at 322.789 kb on + strand, within ABIE53_004153at 322.789 kb on + strand, within ABIE53_004153at 322.789 kb on + strand, within ABIE53_004153at 322.789 kb on + strand, within ABIE53_004153at 322.790 kb on - strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.793 kb on + strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.794 kb on - strand, within ABIE53_004153at 322.797 kb on + strand, within ABIE53_004153at 322.797 kb on + strand, within ABIE53_004153at 322.797 kb on + strand, within ABIE53_004153at 322.797 kb on + strand, within ABIE53_004153at 322.797 kb on + strand, within ABIE53_004153at 322.798 kb on - strand, within ABIE53_004153at 322.798 kb on - strand, within ABIE53_004153at 322.798 kb on - strand, within ABIE53_004153at 322.798 kb on - strand, within ABIE53_004153at 322.798 kb on - strand, within ABIE53_004153at 322.798 kb on - strand, within ABIE53_004153at 322.798 kb on - strand, within ABIE53_004153at 322.855 kb on + strand, within ABIE53_004153at 322.965 kb on + strand, within ABIE53_004153at 322.965 kb on + strand, within ABIE53_004153at 322.965 kb on + strand, within ABIE53_004153at 322.966 kb on - strand, within ABIE53_004153at 323.170 kb on + strandat 323.170 kb on + strandat 323.171 kb on - strandat 323.270 kb on + strandat 323.271 kb on - strandat 323.271 kb on - strandat 323.271 kb on - strandat 323.338 kb on + strandat 323.338 kb on + strandat 323.339 kb on - strandat 323.339 kb on - strandat 323.339 kb on - strandat 323.339 kb on - strandat 323.339 kb on - strandat 323.339 kb on - strandat 323.339 kb on - strandat 323.358 kb on - strandat 323.358 kb on - strandat 323.645 kb on - strandat 323.763 kb on + strand, within ABIE53_004154at 323.764 kb on - strand, within ABIE53_004154at 324.043 kb on - strand, within ABIE53_004154at 324.054 kb on + strand, within ABIE53_004154at 324.055 kb on - strand, within ABIE53_004154at 324.055 kb on - strand, within ABIE53_004154at 324.162 kb on + strand, within ABIE53_004154at 324.162 kb on + strand, within ABIE53_004154at 324.162 kb on + strand, within ABIE53_004154at 324.162 kb on + strand, within ABIE53_004154at 324.162 kb on + strand, within ABIE53_004154at 324.163 kb on - strand, within ABIE53_004154at 324.210 kb on + strand, within ABIE53_004154at 324.210 kb on + strand, within ABIE53_004154at 324.210 kb on + strand, within ABIE53_004154at 324.210 kb on + strand, within ABIE53_004154at 324.210 kb on + strand, within ABIE53_004154at 324.210 kb on + strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.211 kb on - strand, within ABIE53_004154at 324.325 kb on + strand, within ABIE53_004154at 324.326 kb on - strand, within ABIE53_004154at 324.326 kb on - strand, within ABIE53_004154at 324.326 kb on - strand, within ABIE53_004154at 324.326 kb on - strand, within ABIE53_004154at 324.326 kb on - strand, within ABIE53_004154at 324.387 kb on + strand, within ABIE53_004154at 324.387 kb on + strand, within ABIE53_004154at 324.387 kb on + strand, within ABIE53_004154at 324.388 kb on - strand, within ABIE53_004154at 324.388 kb on - strand, within ABIE53_004154at 324.388 kb on - strand, within ABIE53_004154at 324.388 kb on - strand, within ABIE53_004154at 324.391 kb on + strand, within ABIE53_004154at 324.391 kb on + strand, within ABIE53_004154at 324.392 kb on - strand, within ABIE53_004154at 324.423 kb on - strand, within ABIE53_004154at 324.537 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.549 kb on + strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.550 kb on - strand, within ABIE53_004154at 324.551 kb on - strand, within ABIE53_004154at 324.762 kb on + strand, within ABIE53_004154at 324.762 kb on + strand, within ABIE53_004154at 324.763 kb on - strand, within ABIE53_004154at 324.763 kb on - strand, within ABIE53_004154at 324.763 kb on - strand, within ABIE53_004154at 324.763 kb on - strand, within ABIE53_004154at 324.798 kb on + strand, within ABIE53_004154at 324.878 kb on + strand, within ABIE53_004154at 324.878 kb on + strand, within ABIE53_004154at 324.879 kb on - strand, within ABIE53_004154at 324.894 kb on + strand, within ABIE53_004154at 324.921 kb on + strand, within ABIE53_004154at 324.921 kb on + strand, within ABIE53_004154at 324.921 kb on + strand, within ABIE53_004154at 324.922 kb on - strand, within ABIE53_004154at 324.968 kb on + strand, within ABIE53_004154at 324.968 kb on + strand, within ABIE53_004154at 325.127 kb on - strand, within ABIE53_004154at 325.151 kb on - strand, within ABIE53_004154at 325.157 kb on - strand, within ABIE53_004154at 325.157 kb on - strand, within ABIE53_004154at 325.331 kb on + strand, within ABIE53_004154at 325.332 kb on - strand, within ABIE53_004154at 325.332 kb on - strand, within ABIE53_004154at 325.332 kb on - strand, within ABIE53_004154at 325.425 kb on + strand, within ABIE53_004154at 325.426 kb on - strand, within ABIE53_004154at 325.426 kb on - strand, within ABIE53_004154at 325.487 kb on - strand, within ABIE53_004154at 325.546 kb on + strand, within ABIE53_004154at 325.547 kb on - strand, within ABIE53_004154at 325.562 kb on + strand, within ABIE53_004154at 325.791 kb on - strand, within ABIE53_004154at 325.854 kb on + strandat 325.854 kb on + strandat 325.854 kb on + strandat 325.854 kb on + strandat 325.855 kb on - strandat 325.855 kb on - strandat 325.855 kb on - strandat 325.872 kb on + strandat 325.989 kb on + strandat 325.990 kb on - strandat 326.016 kb on + strandat 326.017 kb on - strandat 326.183 kb on + strand, within ABIE53_004155at 326.387 kb on + strand, within ABIE53_004155at 326.388 kb on - strand, within ABIE53_004155at 326.388 kb on - strand, within ABIE53_004155at 326.543 kb on - strand, within ABIE53_004155at 326.757 kb on + strandat 326.758 kb on - strandat 326.780 kb on + strandat 326.783 kb on + strandat 326.992 kb on - strandat 326.992 kb on - strandat 327.039 kb on + strandat 327.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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322,560 + ABIE53_004153 0.13 +0.0
322,560 + ABIE53_004153 0.13 -0.0
322,560 + ABIE53_004153 0.13 +0.3
322,560 + ABIE53_004153 0.13 -1.7
322,560 + ABIE53_004153 0.13 +0.5
322,560 + ABIE53_004153 0.13 +1.0
322,560 + ABIE53_004153 0.13 -0.2
322,560 + ABIE53_004153 0.13 +0.2
322,560 + ABIE53_004153 0.13 -0.4
322,560 + ABIE53_004153 0.13 -0.1
322,560 + ABIE53_004153 0.13 -0.7
322,560 + ABIE53_004153 0.13 +0.1
322,560 + ABIE53_004153 0.13 +0.6
322,561 - ABIE53_004153 0.13 -0.4
322,561 - ABIE53_004153 0.13 +0.2
322,561 - ABIE53_004153 0.13 +0.6
322,561 - ABIE53_004153 0.13 +0.8
322,561 - ABIE53_004153 0.13 +0.0
322,561 - ABIE53_004153 0.13 -0.7
322,561 - ABIE53_004153 0.13 -0.5
322,561 - ABIE53_004153 0.13 +1.7
322,561 - ABIE53_004153 0.13 -1.1
322,561 - ABIE53_004153 0.13 +0.1
322,561 - ABIE53_004153 0.13 -0.3
322,561 - ABIE53_004153 0.13 -0.0
322,561 - ABIE53_004153 0.13 +0.9
322,561 - ABIE53_004153 0.13 +0.1
322,567 + ABIE53_004153 0.14 -1.2
322,567 + ABIE53_004153 0.14 +0.5
322,567 + ABIE53_004153 0.14 -0.3
322,567 + ABIE53_004153 0.14 -0.2
322,611 + ABIE53_004153 0.20 -0.5
322,643 + ABIE53_004153 0.25 -0.9
322,643 + ABIE53_004153 0.25 -2.3
322,643 + ABIE53_004153 0.25 -0.2
322,644 - ABIE53_004153 0.25 -1.0
322,644 - ABIE53_004153 0.25 +1.6
322,644 - ABIE53_004153 0.25 -2.5
322,644 - ABIE53_004153 0.25 -0.8
322,644 - ABIE53_004153 0.25 +1.3
322,704 + ABIE53_004153 0.33 -0.5
322,705 - ABIE53_004153 0.33 +0.0
322,770 + ABIE53_004153 0.43 -1.7
322,789 + ABIE53_004153 0.45 +0.1
322,789 + ABIE53_004153 0.45 +0.6
322,789 + ABIE53_004153 0.45 +0.1
322,789 + ABIE53_004153 0.45 -0.2
322,790 - ABIE53_004153 0.45 +0.5
322,793 + ABIE53_004153 0.46 -0.5
322,793 + ABIE53_004153 0.46 -1.4
322,793 + ABIE53_004153 0.46 -0.2
322,793 + ABIE53_004153 0.46 -1.0
322,793 + ABIE53_004153 0.46 -0.2
322,793 + ABIE53_004153 0.46 -0.5
322,793 + ABIE53_004153 0.46 -0.1
322,793 + ABIE53_004153 0.46 -0.2
322,793 + ABIE53_004153 0.46 +0.3
322,793 + ABIE53_004153 0.46 +0.2
322,793 + ABIE53_004153 0.46 -0.7
322,793 + ABIE53_004153 0.46 +0.2
322,794 - ABIE53_004153 0.46 +0.7
322,794 - ABIE53_004153 0.46 +0.3
322,794 - ABIE53_004153 0.46 -0.7
322,794 - ABIE53_004153 0.46 -2.1
322,794 - ABIE53_004153 0.46 +0.2
322,794 - ABIE53_004153 0.46 -0.5
322,794 - ABIE53_004153 0.46 -0.5
322,794 - ABIE53_004153 0.46 -0.5
322,797 + ABIE53_004153 0.46 +0.2
322,797 + ABIE53_004153 0.46 -1.2
322,797 + ABIE53_004153 0.46 -0.7
322,797 + ABIE53_004153 0.46 +0.9
322,797 + ABIE53_004153 0.46 -0.0
322,798 - ABIE53_004153 0.46 -0.7
322,798 - ABIE53_004153 0.46 -1.0
322,798 - ABIE53_004153 0.46 -0.7
322,798 - ABIE53_004153 0.46 +2.1
322,798 - ABIE53_004153 0.46 -0.1
322,798 - ABIE53_004153 0.46 -0.2
322,798 - ABIE53_004153 0.46 -0.6
322,855 + ABIE53_004153 0.55 -0.2
322,965 + ABIE53_004153 0.70 -0.4
322,965 + ABIE53_004153 0.70 -0.7
322,965 + ABIE53_004153 0.70 +1.0
322,966 - ABIE53_004153 0.70 -0.9
323,170 + +0.3
323,170 + -0.5
323,171 - +0.4
323,270 + +1.9
323,271 - -0.6
323,271 - -0.4
323,271 - +1.3
323,338 + +0.3
323,338 + -0.7
323,339 - +1.8
323,339 - -0.7
323,339 - +0.8
323,339 - -1.0
323,339 - +1.3
323,339 - -0.7
323,339 - -1.0
323,358 - -0.8
323,358 - -0.2
323,645 - -0.7
323,763 + ABIE53_004154 0.14 -0.7
323,764 - ABIE53_004154 0.14 -0.7
324,043 - ABIE53_004154 0.24 -0.3
324,054 + ABIE53_004154 0.25 -1.2
324,055 - ABIE53_004154 0.25 +1.0
324,055 - ABIE53_004154 0.25 +0.6
324,162 + ABIE53_004154 0.29 +0.3
324,162 + ABIE53_004154 0.29 -1.5
324,162 + ABIE53_004154 0.29 -0.7
324,162 + ABIE53_004154 0.29 -0.0
324,162 + ABIE53_004154 0.29 -0.8
324,163 - ABIE53_004154 0.29 +0.8
324,210 + ABIE53_004154 0.30 +1.0
324,210 + ABIE53_004154 0.30 +0.2
324,210 + ABIE53_004154 0.30 -1.0
324,210 + ABIE53_004154 0.30 -0.3
324,210 + ABIE53_004154 0.30 +2.9
324,210 + ABIE53_004154 0.30 -0.2
324,211 - ABIE53_004154 0.30 +0.0
324,211 - ABIE53_004154 0.30 +0.7
324,211 - ABIE53_004154 0.30 +0.2
324,211 - ABIE53_004154 0.30 -0.5
324,211 - ABIE53_004154 0.30 +1.8
324,211 - ABIE53_004154 0.30 -0.2
324,211 - ABIE53_004154 0.30 -1.0
324,211 - ABIE53_004154 0.30 +1.1
324,211 - ABIE53_004154 0.30 +0.3
324,211 - ABIE53_004154 0.30 +0.4
324,211 - ABIE53_004154 0.30 -0.8
324,211 - ABIE53_004154 0.30 +0.3
324,325 + ABIE53_004154 0.35 +0.5
324,326 - ABIE53_004154 0.35 -1.0
324,326 - ABIE53_004154 0.35 -1.3
324,326 - ABIE53_004154 0.35 +0.8
324,326 - ABIE53_004154 0.35 -1.9
324,326 - ABIE53_004154 0.35 +1.8
324,387 + ABIE53_004154 0.37 -0.2
324,387 + ABIE53_004154 0.37 +0.9
324,387 + ABIE53_004154 0.37 -0.1
324,388 - ABIE53_004154 0.37 +1.3
324,388 - ABIE53_004154 0.37 +0.8
324,388 - ABIE53_004154 0.37 +0.1
324,388 - ABIE53_004154 0.37 +0.6
324,391 + ABIE53_004154 0.37 +0.5
324,391 + ABIE53_004154 0.37 +1.8
324,392 - ABIE53_004154 0.37 +0.9
324,423 - ABIE53_004154 0.38 -1.0
324,537 + ABIE53_004154 0.43 +0.9
324,549 + ABIE53_004154 0.43 +0.0
324,549 + ABIE53_004154 0.43 -0.8
324,549 + ABIE53_004154 0.43 +0.0
324,549 + ABIE53_004154 0.43 +0.2
324,549 + ABIE53_004154 0.43 +1.3
324,549 + ABIE53_004154 0.43 -0.2
324,549 + ABIE53_004154 0.43 +0.3
324,549 + ABIE53_004154 0.43 -0.3
324,549 + ABIE53_004154 0.43 +0.5
324,550 - ABIE53_004154 0.43 +0.4
324,550 - ABIE53_004154 0.43 +0.1
324,550 - ABIE53_004154 0.43 -0.2
324,550 - ABIE53_004154 0.43 -1.0
324,550 - ABIE53_004154 0.43 -0.2
324,550 - ABIE53_004154 0.43 -0.1
324,550 - ABIE53_004154 0.43 -0.3
324,550 - ABIE53_004154 0.43 +0.2
324,550 - ABIE53_004154 0.43 +0.9
324,550 - ABIE53_004154 0.43 -0.3
324,551 - ABIE53_004154 0.43 +0.2
324,762 + ABIE53_004154 0.51 -0.0
324,762 + ABIE53_004154 0.51 -0.3
324,763 - ABIE53_004154 0.51 +0.1
324,763 - ABIE53_004154 0.51 +0.4
324,763 - ABIE53_004154 0.51 -0.2
324,763 - ABIE53_004154 0.51 -1.1
324,798 + ABIE53_004154 0.53 -1.1
324,878 + ABIE53_004154 0.56 -0.2
324,878 + ABIE53_004154 0.56 +0.5
324,879 - ABIE53_004154 0.56 +0.2
324,894 + ABIE53_004154 0.56 -0.6
324,921 + ABIE53_004154 0.57 -1.6
324,921 + ABIE53_004154 0.57 +0.1
324,921 + ABIE53_004154 0.57 -0.7
324,922 - ABIE53_004154 0.57 -0.4
324,968 + ABIE53_004154 0.59 +1.3
324,968 + ABIE53_004154 0.59 +0.5
325,127 - ABIE53_004154 0.65 +0.5
325,151 - ABIE53_004154 0.66 +0.3
325,157 - ABIE53_004154 0.66 -0.7
325,157 - ABIE53_004154 0.66 +2.1
325,331 + ABIE53_004154 0.73 -0.4
325,332 - ABIE53_004154 0.73 -0.5
325,332 - ABIE53_004154 0.73 -0.1
325,332 - ABIE53_004154 0.73 +0.6
325,425 + ABIE53_004154 0.76 -1.2
325,426 - ABIE53_004154 0.76 -2.1
325,426 - ABIE53_004154 0.76 -0.1
325,487 - ABIE53_004154 0.78 -0.5
325,546 + ABIE53_004154 0.81 -1.1
325,547 - ABIE53_004154 0.81 +0.0
325,562 + ABIE53_004154 0.81 -0.8
325,791 - ABIE53_004154 0.90 -0.2
325,854 + +0.3
325,854 + +0.3
325,854 + +1.3
325,854 + -0.3
325,855 - -0.8
325,855 - -0.2
325,855 - -0.4
325,872 + -0.5
325,989 + -0.1
325,990 - -0.3
326,016 + -0.4
326,017 - +0.7
326,183 + ABIE53_004155 0.19 +0.0
326,387 + ABIE53_004155 0.50 +0.6
326,388 - ABIE53_004155 0.50 +0.1
326,388 - ABIE53_004155 0.50 +0.2
326,543 - ABIE53_004155 0.73 -0.2
326,757 + -0.3
326,758 - -0.2
326,780 + -0.7
326,783 + -0.1
326,992 - -0.2
326,992 - -2.5
327,039 + -2.2
327,039 + -0.1

Or see this region's nucleotide sequence