Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000643 and ABIE53_000644 overlap by 4 nucleotides ABIE53_000644 and ABIE53_000645 are separated by 19 nucleotides ABIE53_000645 and ABIE53_000646 are separated by 342 nucleotides
ABIE53_000643: ABIE53_000643 - putative spermidine/putrescine transport system permease protein, at 699,736 to 700,674
_000643
ABIE53_000644: ABIE53_000644 - putative spermidine/putrescine transport system permease protein, at 700,671 to 701,462
_000644
ABIE53_000645: ABIE53_000645 - putative spermidine/putrescine transport system ATP-binding protein, at 701,482 to 702,552
_000645
ABIE53_000646: ABIE53_000646 - aerobic C4-dicarboxylate transport protein, at 702,895 to 704,226
_000646
Position (kb) 701
702
703 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 700.493 kb on - strand, within ABIE53_000643 at 700.547 kb on + strand, within ABIE53_000643 at 700.547 kb on + strand, within ABIE53_000643 at 700.547 kb on + strand, within ABIE53_000643 at 700.548 kb on - strand, within ABIE53_000643 at 700.548 kb on - strand, within ABIE53_000643 at 700.633 kb on + strand at 700.634 kb on - strand at 700.725 kb on + strand at 700.725 kb on + strand at 700.726 kb on - strand at 700.726 kb on - strand at 700.785 kb on + strand, within ABIE53_000644 at 700.785 kb on + strand, within ABIE53_000644 at 700.785 kb on + strand, within ABIE53_000644 at 700.785 kb on + strand, within ABIE53_000644 at 700.785 kb on + strand, within ABIE53_000644 at 700.785 kb on + strand, within ABIE53_000644 at 700.785 kb on + strand, within ABIE53_000644 at 700.786 kb on - strand, within ABIE53_000644 at 700.786 kb on - strand, within ABIE53_000644 at 700.800 kb on + strand, within ABIE53_000644 at 700.800 kb on + strand, within ABIE53_000644 at 700.801 kb on - strand, within ABIE53_000644 at 700.801 kb on - strand, within ABIE53_000644 at 700.801 kb on - strand, within ABIE53_000644 at 700.801 kb on - strand, within ABIE53_000644 at 700.802 kb on + strand, within ABIE53_000644 at 700.802 kb on + strand, within ABIE53_000644 at 700.802 kb on + strand, within ABIE53_000644 at 700.803 kb on - strand, within ABIE53_000644 at 700.803 kb on - strand, within ABIE53_000644 at 700.803 kb on - strand, within ABIE53_000644 at 700.885 kb on + strand, within ABIE53_000644 at 700.886 kb on - strand, within ABIE53_000644 at 700.886 kb on - strand, within ABIE53_000644 at 700.886 kb on - strand, within ABIE53_000644 at 700.886 kb on - strand, within ABIE53_000644 at 700.886 kb on - strand, within ABIE53_000644 at 700.908 kb on + strand, within ABIE53_000644 at 701.016 kb on + strand, within ABIE53_000644 at 701.016 kb on + strand, within ABIE53_000644 at 701.016 kb on + strand, within ABIE53_000644 at 701.016 kb on + strand, within ABIE53_000644 at 701.017 kb on - strand, within ABIE53_000644 at 701.017 kb on - strand, within ABIE53_000644 at 701.017 kb on - strand, within ABIE53_000644 at 701.017 kb on - strand, within ABIE53_000644 at 701.078 kb on - strand, within ABIE53_000644 at 701.078 kb on - strand, within ABIE53_000644 at 701.078 kb on - strand, within ABIE53_000644 at 701.085 kb on + strand, within ABIE53_000644 at 701.085 kb on + strand, within ABIE53_000644 at 701.086 kb on - strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.106 kb on + strand, within ABIE53_000644 at 701.107 kb on - strand, within ABIE53_000644 at 701.107 kb on - strand, within ABIE53_000644 at 701.107 kb on - strand, within ABIE53_000644 at 701.107 kb on - strand, within ABIE53_000644 at 701.107 kb on - strand, within ABIE53_000644 at 701.112 kb on + strand, within ABIE53_000644 at 701.112 kb on + strand, within ABIE53_000644 at 701.112 kb on + strand, within ABIE53_000644 at 701.112 kb on + strand, within ABIE53_000644 at 701.112 kb on + strand, within ABIE53_000644 at 701.113 kb on - strand, within ABIE53_000644 at 701.113 kb on - strand, within ABIE53_000644 at 701.114 kb on - strand, within ABIE53_000644 at 701.226 kb on - strand, within ABIE53_000644 at 701.325 kb on + strand, within ABIE53_000644 at 701.325 kb on + strand, within ABIE53_000644 at 701.325 kb on + strand, within ABIE53_000644 at 701.325 kb on + strand, within ABIE53_000644 at 701.325 kb on + strand, within ABIE53_000644 at 701.355 kb on + strand, within ABIE53_000644 at 701.356 kb on - strand, within ABIE53_000644 at 701.356 kb on - strand, within ABIE53_000644 at 701.356 kb on - strand, within ABIE53_000644 at 701.356 kb on - strand, within ABIE53_000644 at 701.393 kb on + strand at 701.393 kb on + strand at 701.393 kb on + strand at 701.393 kb on + strand at 701.394 kb on - strand at 701.394 kb on - strand at 701.394 kb on - strand at 701.394 kb on - strand at 701.416 kb on + strand at 701.416 kb on + strand at 701.417 kb on - strand at 701.417 kb on - strand at 701.417 kb on - strand at 701.417 kb on - strand at 701.417 kb on - strand at 701.417 kb on - strand at 701.498 kb on + strand at 701.577 kb on + strand at 701.577 kb on + strand at 701.577 kb on + strand at 701.578 kb on - strand at 701.578 kb on - strand at 701.578 kb on - strand at 701.578 kb on - strand at 701.578 kb on - strand at 701.578 kb on - strand at 701.578 kb on - strand at 701.731 kb on + strand, within ABIE53_000645 at 701.731 kb on + strand, within ABIE53_000645 at 701.732 kb on - strand, within ABIE53_000645 at 701.732 kb on - strand, within ABIE53_000645 at 701.732 kb on - strand, within ABIE53_000645 at 701.780 kb on + strand, within ABIE53_000645 at 701.781 kb on - strand, within ABIE53_000645 at 701.942 kb on + strand, within ABIE53_000645 at 701.942 kb on + strand, within ABIE53_000645 at 701.943 kb on - strand, within ABIE53_000645 at 701.943 kb on - strand, within ABIE53_000645 at 701.943 kb on - strand, within ABIE53_000645 at 702.145 kb on + strand, within ABIE53_000645 at 702.145 kb on + strand, within ABIE53_000645 at 702.145 kb on + strand, within ABIE53_000645 at 702.145 kb on + strand, within ABIE53_000645 at 702.145 kb on + strand, within ABIE53_000645 at 702.145 kb on + strand, within ABIE53_000645 at 702.146 kb on - strand, within ABIE53_000645 at 702.146 kb on - strand, within ABIE53_000645 at 702.146 kb on - strand, within ABIE53_000645 at 702.146 kb on - strand, within ABIE53_000645 at 702.151 kb on + strand, within ABIE53_000645 at 702.152 kb on - strand, within ABIE53_000645 at 702.152 kb on - strand, within ABIE53_000645 at 702.195 kb on + strand, within ABIE53_000645 at 702.195 kb on + strand, within ABIE53_000645 at 702.196 kb on - strand, within ABIE53_000645 at 702.196 kb on - strand, within ABIE53_000645 at 702.196 kb on - strand, within ABIE53_000645 at 702.196 kb on - strand, within ABIE53_000645 at 702.425 kb on + strand, within ABIE53_000645 at 702.426 kb on - strand, within ABIE53_000645 at 702.426 kb on - strand, within ABIE53_000645 at 702.452 kb on + strand at 702.453 kb on - strand at 702.453 kb on - strand at 702.453 kb on - strand at 702.697 kb on + strand at 702.698 kb on - strand at 702.724 kb on + strand at 702.725 kb on - strand at 702.731 kb on + strand at 702.762 kb on + strand at 702.762 kb on + strand at 702.762 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.792 kb on + strand at 702.793 kb on - strand at 702.793 kb on - strand at 702.793 kb on - strand at 702.793 kb on - strand at 702.793 kb on - strand at 702.831 kb on + strand at 702.832 kb on - strand at 702.832 kb on - strand at 702.832 kb on - strand at 702.861 kb on + strand at 702.861 kb on + strand at 702.862 kb on - strand at 702.862 kb on - strand at 702.862 kb on - strand at 702.862 kb on - strand at 702.957 kb on + strand at 702.958 kb on - strand at 702.958 kb on - strand at 702.958 kb on - strand at 702.958 kb on - strand at 702.973 kb on + strand at 702.973 kb on + strand at 702.973 kb on + strand at 702.974 kb on - strand at 702.974 kb on - strand at 702.974 kb on - strand at 702.974 kb on - strand at 702.974 kb on - strand at 702.974 kb on - strand at 702.974 kb on - strand at 703.024 kb on + strand at 703.024 kb on + strand at 703.111 kb on - strand, within ABIE53_000646 at 703.111 kb on - strand, within ABIE53_000646 at 703.111 kb on - strand, within ABIE53_000646 at 703.183 kb on + strand, within ABIE53_000646 at 703.183 kb on + strand, within ABIE53_000646 at 703.183 kb on + strand, within ABIE53_000646 at 703.183 kb on + strand, within ABIE53_000646 at 703.183 kb on + strand, within ABIE53_000646 at 703.184 kb on - strand, within ABIE53_000646 at 703.184 kb on - strand, within ABIE53_000646 at 703.184 kb on - strand, within ABIE53_000646 at 703.184 kb on - strand, within ABIE53_000646 at 703.303 kb on + strand, within ABIE53_000646 at 703.303 kb on + strand, within ABIE53_000646 at 703.303 kb on + strand, within ABIE53_000646 at 703.303 kb on + strand, within ABIE53_000646 at 703.303 kb on + strand, within ABIE53_000646 at 703.304 kb on - strand, within ABIE53_000646 at 703.304 kb on - strand, within ABIE53_000646 at 703.304 kb on - strand, within ABIE53_000646 at 703.304 kb on - strand, within ABIE53_000646 at 703.304 kb on - strand, within ABIE53_000646 at 703.476 kb on + strand, within ABIE53_000646 at 703.477 kb on - strand, within ABIE53_000646 at 703.479 kb on - strand, within ABIE53_000646
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 700,493 - ABIE53_000643 0.81 +0.9 700,547 + ABIE53_000643 0.86 -1.2 700,547 + ABIE53_000643 0.86 -0.7 700,547 + ABIE53_000643 0.86 -0.8 700,548 - ABIE53_000643 0.86 -1.4 700,548 - ABIE53_000643 0.86 -1.2 700,633 + +0.1 700,634 - -0.8 700,725 + +0.4 700,725 + +1.9 700,726 - -0.0 700,726 - +0.2 700,785 + ABIE53_000644 0.14 -0.9 700,785 + ABIE53_000644 0.14 -0.2 700,785 + ABIE53_000644 0.14 -2.2 700,785 + ABIE53_000644 0.14 +1.6 700,785 + ABIE53_000644 0.14 -0.2 700,785 + ABIE53_000644 0.14 -0.8 700,785 + ABIE53_000644 0.14 +0.6 700,786 - ABIE53_000644 0.15 -0.1 700,786 - ABIE53_000644 0.15 -0.7 700,800 + ABIE53_000644 0.16 -0.8 700,800 + ABIE53_000644 0.16 +0.3 700,801 - ABIE53_000644 0.16 +1.6 700,801 - ABIE53_000644 0.16 +0.2 700,801 - ABIE53_000644 0.16 +2.0 700,801 - ABIE53_000644 0.16 +0.3 700,802 + ABIE53_000644 0.17 -0.4 700,802 + ABIE53_000644 0.17 +0.4 700,802 + ABIE53_000644 0.17 -1.2 700,803 - ABIE53_000644 0.17 +0.6 700,803 - ABIE53_000644 0.17 -0.9 700,803 - ABIE53_000644 0.17 +0.0 700,885 + ABIE53_000644 0.27 +0.9 700,886 - ABIE53_000644 0.27 -1.0 700,886 - ABIE53_000644 0.27 -0.2 700,886 - ABIE53_000644 0.27 +1.6 700,886 - ABIE53_000644 0.27 +0.0 700,886 - ABIE53_000644 0.27 +0.0 700,908 + ABIE53_000644 0.30 -0.5 701,016 + ABIE53_000644 0.44 -0.6 701,016 + ABIE53_000644 0.44 +1.6 701,016 + ABIE53_000644 0.44 +0.6 701,016 + ABIE53_000644 0.44 -0.9 701,017 - ABIE53_000644 0.44 -0.5 701,017 - ABIE53_000644 0.44 -0.2 701,017 - ABIE53_000644 0.44 +0.8 701,017 - ABIE53_000644 0.44 +1.0 701,078 - ABIE53_000644 0.51 +0.2 701,078 - ABIE53_000644 0.51 -0.6 701,078 - ABIE53_000644 0.51 +0.6 701,085 + ABIE53_000644 0.52 +0.0 701,085 + ABIE53_000644 0.52 +0.0 701,086 - ABIE53_000644 0.52 -1.4 701,106 + ABIE53_000644 0.55 +1.6 701,106 + ABIE53_000644 0.55 +0.6 701,106 + ABIE53_000644 0.55 -0.4 701,106 + ABIE53_000644 0.55 -0.5 701,106 + ABIE53_000644 0.55 -0.7 701,106 + ABIE53_000644 0.55 -0.4 701,106 + ABIE53_000644 0.55 +0.4 701,106 + ABIE53_000644 0.55 +0.6 701,107 - ABIE53_000644 0.55 +0.9 701,107 - ABIE53_000644 0.55 +1.3 701,107 - ABIE53_000644 0.55 +0.6 701,107 - ABIE53_000644 0.55 +0.8 701,107 - ABIE53_000644 0.55 -0.2 701,112 + ABIE53_000644 0.56 -1.0 701,112 + ABIE53_000644 0.56 +0.2 701,112 + ABIE53_000644 0.56 -0.9 701,112 + ABIE53_000644 0.56 -1.0 701,112 + ABIE53_000644 0.56 -0.7 701,113 - ABIE53_000644 0.56 +0.0 701,113 - ABIE53_000644 0.56 +0.0 701,114 - ABIE53_000644 0.56 -0.2 701,226 - ABIE53_000644 0.70 +0.4 701,325 + ABIE53_000644 0.83 +0.6 701,325 + ABIE53_000644 0.83 +0.6 701,325 + ABIE53_000644 0.83 -0.5 701,325 + ABIE53_000644 0.83 -0.1 701,325 + ABIE53_000644 0.83 +0.7 701,355 + ABIE53_000644 0.86 +0.0 701,356 - ABIE53_000644 0.86 +1.0 701,356 - ABIE53_000644 0.86 -0.2 701,356 - ABIE53_000644 0.86 +0.2 701,356 - ABIE53_000644 0.86 +0.8 701,393 + +1.2 701,393 + -0.2 701,393 + -0.7 701,393 + -1.5 701,394 - +0.8 701,394 - +0.5 701,394 - -1.4 701,394 - +0.6 701,416 + +1.0 701,416 + +0.0 701,417 - -0.1 701,417 - -0.8 701,417 - +0.6 701,417 - -0.4 701,417 - +0.4 701,417 - -0.2 701,498 + -0.1 701,577 + -1.8 701,577 + -1.4 701,577 + +1.3 701,578 - -0.1 701,578 - +0.9 701,578 - +1.0 701,578 - +1.3 701,578 - +0.7 701,578 - -0.5 701,578 - -0.5 701,731 + ABIE53_000645 0.23 -1.2 701,731 + ABIE53_000645 0.23 -0.8 701,732 - ABIE53_000645 0.23 -0.8 701,732 - ABIE53_000645 0.23 +2.0 701,732 - ABIE53_000645 0.23 +1.0 701,780 + ABIE53_000645 0.28 -0.1 701,781 - ABIE53_000645 0.28 +2.2 701,942 + ABIE53_000645 0.43 +1.6 701,942 + ABIE53_000645 0.43 -0.2 701,943 - ABIE53_000645 0.43 +1.2 701,943 - ABIE53_000645 0.43 -1.0 701,943 - ABIE53_000645 0.43 +0.0 702,145 + ABIE53_000645 0.62 +0.4 702,145 + ABIE53_000645 0.62 +1.1 702,145 + ABIE53_000645 0.62 +0.1 702,145 + ABIE53_000645 0.62 -1.4 702,145 + ABIE53_000645 0.62 -0.6 702,145 + ABIE53_000645 0.62 -0.4 702,146 - ABIE53_000645 0.62 +0.3 702,146 - ABIE53_000645 0.62 +2.0 702,146 - ABIE53_000645 0.62 -0.4 702,146 - ABIE53_000645 0.62 +1.5 702,151 + ABIE53_000645 0.62 +0.0 702,152 - ABIE53_000645 0.63 +0.0 702,152 - ABIE53_000645 0.63 -2.1 702,195 + ABIE53_000645 0.67 +0.4 702,195 + ABIE53_000645 0.67 -1.1 702,196 - ABIE53_000645 0.67 -2.3 702,196 - ABIE53_000645 0.67 -0.7 702,196 - ABIE53_000645 0.67 -0.8 702,196 - ABIE53_000645 0.67 -0.9 702,425 + ABIE53_000645 0.88 +0.2 702,426 - ABIE53_000645 0.88 +1.6 702,426 - ABIE53_000645 0.88 +0.0 702,452 + -0.6 702,453 - -1.5 702,453 - +2.1 702,453 - +0.5 702,697 + +1.6 702,698 - -1.0 702,724 + -2.3 702,725 - -2.7 702,731 + -1.0 702,762 + -0.2 702,762 + -0.2 702,762 + +1.0 702,792 + -0.4 702,792 + +0.2 702,792 + +0.8 702,792 + +1.5 702,792 + +0.4 702,792 + -1.0 702,792 + +0.4 702,792 + +0.4 702,792 + -0.6 702,792 + +0.4 702,793 - -1.0 702,793 - -1.7 702,793 - +0.0 702,793 - -0.7 702,793 - +0.6 702,831 + -2.5 702,832 - -3.1 702,832 - -1.4 702,832 - -2.2 702,861 + -0.4 702,861 + +1.6 702,862 - +0.3 702,862 - -1.2 702,862 - -2.9 702,862 - -4.0 702,957 + -3.2 702,958 - -2.2 702,958 - +0.0 702,958 - -0.4 702,958 - -1.7 702,973 + -0.7 702,973 + -1.8 702,973 + -1.8 702,974 - -1.0 702,974 - -2.0 702,974 - -1.0 702,974 - -2.5 702,974 - -1.6 702,974 - +1.6 702,974 - -2.7 703,024 + +0.0 703,024 + -1.5 703,111 - ABIE53_000646 0.16 +0.0 703,111 - ABIE53_000646 0.16 -1.2 703,111 - ABIE53_000646 0.16 -2.2 703,183 + ABIE53_000646 0.22 -0.7 703,183 + ABIE53_000646 0.22 +0.6 703,183 + ABIE53_000646 0.22 +0.6 703,183 + ABIE53_000646 0.22 -1.4 703,183 + ABIE53_000646 0.22 -1.0 703,184 - ABIE53_000646 0.22 -3.9 703,184 - ABIE53_000646 0.22 -1.3 703,184 - ABIE53_000646 0.22 -2.5 703,184 - ABIE53_000646 0.22 -0.4 703,303 + ABIE53_000646 0.31 -3.5 703,303 + ABIE53_000646 0.31 -3.1 703,303 + ABIE53_000646 0.31 -0.7 703,303 + ABIE53_000646 0.31 -3.4 703,303 + ABIE53_000646 0.31 -2.0 703,304 - ABIE53_000646 0.31 -1.2 703,304 - ABIE53_000646 0.31 +0.0 703,304 - ABIE53_000646 0.31 -1.4 703,304 - ABIE53_000646 0.31 -0.4 703,304 - ABIE53_000646 0.31 +0.0 703,476 + ABIE53_000646 0.44 -1.0 703,477 - ABIE53_000646 0.44 -0.7 703,479 - ABIE53_000646 0.44 -3.1
Or see this region's nucleotide sequence