Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21427

Experiment: Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21425 and SM_b21426 are separated by 1 nucleotidesSM_b21426 and SM_b21427 overlap by 1 nucleotidesSM_b21427 and SM_b21428 are separated by 155 nucleotidesSM_b21428 and SM_b21429 are separated by 24 nucleotides SM_b21425: SM_b21425 - hypothetical protein, at 1,357,006 to 1,357,782 _b21425 SM_b21426: SM_b21426 - sugar nucleotide oxidoreductaseepimerase, at 1,357,784 to 1,358,626 _b21426 SM_b21427: SM_b21427 - acetyltransferase, at 1,358,626 to 1,359,114 _b21427 SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833 _b21428 SM_b21429: SM_b21429 - iron ABC transporter ATP-binding protein, at 1,359,858 to 1,360,619 _b21429 Position (kb) 1358 1359 1360Strain fitness (log2 ratio) -1 0 1at 1357.656 kb on + strand, within SM_b21425at 1357.656 kb on + strand, within SM_b21425at 1357.657 kb on - strand, within SM_b21425at 1357.657 kb on - strand, within SM_b21425at 1357.664 kb on + strand, within SM_b21425at 1357.664 kb on + strand, within SM_b21425at 1357.664 kb on + strand, within SM_b21425at 1357.678 kb on - strand, within SM_b21425at 1357.865 kb on + strandat 1357.958 kb on + strand, within SM_b21426at 1357.959 kb on - strand, within SM_b21426at 1358.034 kb on + strand, within SM_b21426at 1358.034 kb on + strand, within SM_b21426at 1358.034 kb on + strand, within SM_b21426at 1358.035 kb on - strand, within SM_b21426at 1358.099 kb on - strand, within SM_b21426at 1358.100 kb on + strand, within SM_b21426at 1358.100 kb on + strand, within SM_b21426at 1358.101 kb on - strand, within SM_b21426at 1358.101 kb on - strand, within SM_b21426at 1358.289 kb on + strand, within SM_b21426at 1358.289 kb on + strand, within SM_b21426at 1358.289 kb on + strand, within SM_b21426at 1358.341 kb on + strand, within SM_b21426at 1358.342 kb on - strand, within SM_b21426at 1358.359 kb on - strand, within SM_b21426at 1358.379 kb on + strand, within SM_b21426at 1358.379 kb on + strandat 1358.380 kb on - strand, within SM_b21426at 1358.380 kb on - strand, within SM_b21426at 1358.380 kb on - strand, within SM_b21426at 1358.380 kb on - strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.490 kb on + strand, within SM_b21426at 1358.527 kb on + strand, within SM_b21426at 1358.527 kb on + strand, within SM_b21426at 1358.875 kb on - strand, within SM_b21427at 1358.905 kb on + strand, within SM_b21427at 1358.906 kb on - strand, within SM_b21427at 1358.927 kb on + strand, within SM_b21427at 1358.927 kb on + strand, within SM_b21427at 1358.927 kb on + strand, within SM_b21427at 1358.928 kb on - strand, within SM_b21427at 1358.952 kb on - strand, within SM_b21427at 1358.952 kb on - strand, within SM_b21427at 1358.952 kb on - strand, within SM_b21427at 1359.196 kb on + strandat 1359.196 kb on + strandat 1359.197 kb on - strandat 1359.227 kb on + strandat 1359.227 kb on + strandat 1359.228 kb on - strandat 1359.585 kb on + strand, within SM_b21428at 1359.585 kb on + strand, within SM_b21428at 1359.585 kb on + strand, within SM_b21428at 1359.585 kb on + strand, within SM_b21428at 1359.585 kb on + strand, within SM_b21428at 1359.586 kb on - strand, within SM_b21428at 1359.586 kb on - strand, within SM_b21428at 1359.586 kb on - strand, within SM_b21428at 1359.586 kb on - strand, within SM_b21428at 1359.938 kb on - strand, within SM_b21429at 1360.030 kb on + strand, within SM_b21429at 1360.030 kb on + strand, within SM_b21429

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM
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1,357,656 + SM_b21425 0.84 +0.3
1,357,656 + SM_b21425 0.84 +0.4
1,357,657 - SM_b21425 0.84 +0.0
1,357,657 - SM_b21425 0.84 +0.3
1,357,664 + SM_b21425 0.85 +0.2
1,357,664 + SM_b21425 0.85 -0.4
1,357,664 + SM_b21425 0.85 +1.6
1,357,678 - SM_b21425 0.86 +0.3
1,357,865 + -0.1
1,357,958 + SM_b21426 0.21 +0.5
1,357,959 - SM_b21426 0.21 -0.9
1,358,034 + SM_b21426 0.30 -0.1
1,358,034 + SM_b21426 0.30 +0.3
1,358,034 + SM_b21426 0.30 +1.0
1,358,035 - SM_b21426 0.30 -1.2
1,358,099 - SM_b21426 0.37 +0.1
1,358,100 + SM_b21426 0.37 +0.4
1,358,100 + SM_b21426 0.37 +0.1
1,358,101 - SM_b21426 0.38 +0.5
1,358,101 - SM_b21426 0.38 +0.1
1,358,289 + SM_b21426 0.60 -0.0
1,358,289 + SM_b21426 0.60 -0.4
1,358,289 + SM_b21426 0.60 -0.6
1,358,341 + SM_b21426 0.66 -0.6
1,358,342 - SM_b21426 0.66 +0.7
1,358,359 - SM_b21426 0.68 +0.2
1,358,379 + SM_b21426 0.71 +0.4
1,358,379 + -0.1
1,358,380 - SM_b21426 0.71 +0.7
1,358,380 - SM_b21426 0.71 +0.1
1,358,380 - SM_b21426 0.71 +0.5
1,358,380 - SM_b21426 0.71 +0.5
1,358,490 + SM_b21426 0.84 -0.1
1,358,490 + SM_b21426 0.84 -0.1
1,358,490 + SM_b21426 0.84 -0.1
1,358,490 + SM_b21426 0.84 +0.2
1,358,490 + SM_b21426 0.84 -0.1
1,358,527 + SM_b21426 0.88 +1.5
1,358,527 + SM_b21426 0.88 +0.2
1,358,875 - SM_b21427 0.51 -0.6
1,358,905 + SM_b21427 0.57 +0.3
1,358,906 - SM_b21427 0.57 +0.2
1,358,927 + SM_b21427 0.62 +1.4
1,358,927 + SM_b21427 0.62 +0.4
1,358,927 + SM_b21427 0.62 +0.3
1,358,928 - SM_b21427 0.62 +0.7
1,358,952 - SM_b21427 0.67 +0.5
1,358,952 - SM_b21427 0.67 -0.3
1,358,952 - SM_b21427 0.67 -0.3
1,359,196 + +1.1
1,359,196 + +0.4
1,359,197 - -0.8
1,359,227 + -1.1
1,359,227 + +0.2
1,359,228 - +0.0
1,359,585 + SM_b21428 0.56 +0.4
1,359,585 + SM_b21428 0.56 +0.6
1,359,585 + SM_b21428 0.56 +0.0
1,359,585 + SM_b21428 0.56 +1.4
1,359,585 + SM_b21428 0.56 +0.3
1,359,586 - SM_b21428 0.56 +0.2
1,359,586 - SM_b21428 0.56 +0.4
1,359,586 - SM_b21428 0.56 +0.3
1,359,586 - SM_b21428 0.56 +0.6
1,359,938 - SM_b21429 0.10 -0.6
1,360,030 + SM_b21429 0.23 +0.1
1,360,030 + SM_b21429 0.23 -0.3

Or see this region's nucleotide sequence