Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21374

Experiment: Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21373 and SM_b21374 are separated by 2 nucleotidesSM_b21374 and SM_b21375 are separated by 23 nucleotidesSM_b21375 and SM_b21376 overlap by 4 nucleotides SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data), at 1,037,716 to 1,038,996 _b21373 SM_b21374: SM_b21374 - tagatose kinase (EC 2.7.1.101) (from data), at 1,038,999 to 1,039,940 _b21374 SM_b21375: SM_b21375 - sugar uptake ABC transporter permease, at 1,039,964 to 1,040,926 _b21375 SM_b21376: SM_b21376 - sugar uptake ABC transporter ATP-binding protein, at 1,040,923 to 1,042,434 _b21376 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -2 -1 0 1at 1038.278 kb on + strandat 1038.279 kb on - strand, within SM_b21373at 1038.436 kb on + strandat 1038.437 kb on - strand, within SM_b21373at 1038.437 kb on - strand, within SM_b21373at 1038.644 kb on + strand, within SM_b21373at 1038.645 kb on - strand, within SM_b21373at 1038.816 kb on - strand, within SM_b21373at 1039.392 kb on - strand, within SM_b21374at 1039.392 kb on - strand, within SM_b21374at 1039.410 kb on - strand, within SM_b21374at 1039.929 kb on + strandat 1039.930 kb on - strandat 1039.930 kb on - strandat 1040.040 kb on + strandat 1040.041 kb on - strandat 1040.047 kb on - strandat 1040.047 kb on - strandat 1040.184 kb on + strand, within SM_b21375at 1040.521 kb on - strand, within SM_b21375at 1040.524 kb on + strand, within SM_b21375at 1040.524 kb on + strand, within SM_b21375at 1040.524 kb on + strand, within SM_b21375at 1040.525 kb on - strand, within SM_b21375at 1040.798 kb on + strand, within SM_b21375at 1040.874 kb on + strandat 1040.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM
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1,038,278 + +1.1
1,038,279 - SM_b21373 0.44 +1.1
1,038,436 + -0.2
1,038,437 - SM_b21373 0.56 -0.3
1,038,437 - SM_b21373 0.56 -1.9
1,038,644 + SM_b21373 0.72 -0.7
1,038,645 - SM_b21373 0.73 +0.7
1,038,816 - SM_b21373 0.86 +0.9
1,039,392 - SM_b21374 0.42 +1.2
1,039,392 - SM_b21374 0.42 +0.6
1,039,410 - SM_b21374 0.44 +1.1
1,039,929 + +1.1
1,039,930 - +0.8
1,039,930 - +0.6
1,040,040 + -0.7
1,040,041 - +0.0
1,040,047 - -0.2
1,040,047 - -0.9
1,040,184 + SM_b21375 0.23 -0.1
1,040,521 - SM_b21375 0.58 -1.1
1,040,524 + SM_b21375 0.58 -0.1
1,040,524 + SM_b21375 0.58 -0.2
1,040,524 + SM_b21375 0.58 +0.3
1,040,525 - SM_b21375 0.58 +0.0
1,040,798 + SM_b21375 0.87 -0.4
1,040,874 + +0.8
1,040,874 + +0.1

Or see this region's nucleotide sequence