Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22045 and RR42_RS22050 are separated by 11 nucleotides RR42_RS22050 and RR42_RS22055 overlap by 4 nucleotides
RR42_RS22045: RR42_RS22045 - flagellar motor protein MotB, at 278,978 to 280,693
_RS22045
RR42_RS22050: RR42_RS22050 - DotU family type IV / VI secretion system protein, at 280,705 to 281,358
_RS22050
RR42_RS22055: RR42_RS22055 - type VI secretion protein, at 281,355 to 282,662
_RS22055
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 279.825 kb on + strand, within RR42_RS22045 at 279.825 kb on + strand, within RR42_RS22045 at 280.068 kb on - strand, within RR42_RS22045 at 280.068 kb on - strand, within RR42_RS22045 at 280.448 kb on - strand, within RR42_RS22045 at 280.459 kb on + strand, within RR42_RS22045 at 280.976 kb on + strand, within RR42_RS22050 at 281.388 kb on + strand at 281.389 kb on - strand at 281.389 kb on - strand at 281.413 kb on + strand at 281.413 kb on + strand at 281.414 kb on - strand at 281.479 kb on + strand at 281.594 kb on + strand, within RR42_RS22055 at 281.595 kb on - strand, within RR42_RS22055 at 281.595 kb on - strand, within RR42_RS22055 at 281.659 kb on + strand, within RR42_RS22055 at 281.732 kb on + strand, within RR42_RS22055 at 281.828 kb on - strand, within RR42_RS22055 at 281.960 kb on + strand, within RR42_RS22055 at 281.960 kb on + strand, within RR42_RS22055 at 281.961 kb on - strand, within RR42_RS22055 at 281.961 kb on - strand, within RR42_RS22055 at 281.961 kb on - strand, within RR42_RS22055 at 282.211 kb on + strand, within RR42_RS22055 at 282.211 kb on + strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055 at 282.212 kb on - strand, within RR42_RS22055
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 279,825 + RR42_RS22045 0.49 +1.5 279,825 + RR42_RS22045 0.49 -0.9 280,068 - RR42_RS22045 0.64 -0.1 280,068 - RR42_RS22045 0.64 -0.6 280,448 - RR42_RS22045 0.86 -0.2 280,459 + RR42_RS22045 0.86 +0.2 280,976 + RR42_RS22050 0.41 +0.7 281,388 + -0.5 281,389 - +1.1 281,389 - +0.2 281,413 + +1.1 281,413 + +0.1 281,414 - +0.3 281,479 + -0.1 281,594 + RR42_RS22055 0.18 -2.6 281,595 - RR42_RS22055 0.18 -0.4 281,595 - RR42_RS22055 0.18 -0.5 281,659 + RR42_RS22055 0.23 -0.4 281,732 + RR42_RS22055 0.29 +0.3 281,828 - RR42_RS22055 0.36 +0.4 281,960 + RR42_RS22055 0.46 -0.7 281,960 + RR42_RS22055 0.46 -0.2 281,961 - RR42_RS22055 0.46 +0.1 281,961 - RR42_RS22055 0.46 +1.4 281,961 - RR42_RS22055 0.46 -0.5 282,211 + RR42_RS22055 0.65 +0.5 282,211 + RR42_RS22055 0.65 +0.5 282,212 - RR42_RS22055 0.66 -1.1 282,212 - RR42_RS22055 0.66 +0.4 282,212 - RR42_RS22055 0.66 -0.4 282,212 - RR42_RS22055 0.66 +0.7
Or see this region's nucleotide sequence