Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18970

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
4,104,248	+		RR42_RS18960	0.73	-0.5
4,104,248	+		RR42_RS18960	0.73	-0.6
4,104,249	-		RR42_RS18960	0.73	+0.0
4,104,249	-		RR42_RS18960	0.73	-0.0
4,104,251	+		RR42_RS18960	0.73	+0.2
4,104,251	+		RR42_RS18960	0.73	+0.2
4,104,252	-		RR42_RS18960	0.73	+1.8
4,104,252	-		RR42_RS18960	0.73	-0.4
4,104,274	+		RR42_RS18960	0.77	+0.6
4,104,274	+		RR42_RS18960	0.77	-2.5
4,104,274	+		RR42_RS18960	0.77	+2.1
4,104,275	-		RR42_RS18960	0.78	-0.1
4,104,275	-		RR42_RS18960	0.78	-1.0
4,104,275	-		RR42_RS18960	0.78	+0.3
4,104,380	+				-1.1
4,104,380	+				-0.7
4,104,380	+				+0.6
4,104,380	+				+0.0
4,104,381	-				-0.1
4,104,381	-				-1.0
4,104,381	-				-0.9
4,104,412	-				-0.0
4,104,412	-				-2.2
4,104,412	-				-3.2
4,104,557	+		RR42_RS18965	0.15	+1.3
4,104,557	+		RR42_RS18965	0.15	-0.1
4,104,566	+		RR42_RS18965	0.16	-3.2
4,104,567	-		RR42_RS18965	0.16	-2.9
4,104,574	+		RR42_RS18965	0.17	+0.2
4,104,574	+		RR42_RS18965	0.17	+0.1
4,104,574	+		RR42_RS18965	0.17	-0.3
4,104,574	+		RR42_RS18965	0.17	+0.6
4,104,574	+		RR42_RS18965	0.17	+0.4
4,104,574	+		RR42_RS18965	0.17	-1.4
4,104,574	+		RR42_RS18965	0.17	+0.1
4,104,576	+		RR42_RS18965	0.17	+0.4
4,104,577	-		RR42_RS18965	0.17	-2.3
4,104,609	+		RR42_RS18965	0.21	+0.0
4,104,609	+		RR42_RS18965	0.21	-0.5
4,104,609	+		RR42_RS18965	0.21	+1.1
4,104,609	+		RR42_RS18965	0.21	-0.6
4,104,609	+		RR42_RS18965	0.21	-0.4
4,104,610	-		RR42_RS18965	0.22	-3.5
4,104,710	+		RR42_RS18965	0.34	-0.4
4,104,710	+		RR42_RS18965	0.34	-1.5
4,104,710	+		RR42_RS18965	0.34	-1.2
4,104,710	+		RR42_RS18965	0.34	-0.5
4,104,710	+		RR42_RS18965	0.34	-0.2
4,104,710	+		RR42_RS18965	0.34	-0.4
4,104,710	+		RR42_RS18965	0.34	-0.4
4,104,710	+		RR42_RS18965	0.34	+0.2
4,104,710	+		RR42_RS18965	0.34	-0.9
4,104,710	+		RR42_RS18965	0.34	-0.9
4,104,710	+		RR42_RS18965	0.34	-0.5
4,104,710	+		RR42_RS18965	0.34	-0.3
4,104,995	+		RR42_RS18965	0.71	-0.1
4,104,995	+		RR42_RS18965	0.71	-0.4
4,104,995	+		RR42_RS18965	0.71	-1.3
4,104,995	+		RR42_RS18965	0.71	+0.6
4,104,996	-		RR42_RS18965	0.71	-1.7
4,104,998	+		RR42_RS18965	0.72	+0.6
4,104,998	+		RR42_RS18965	0.72	-0.2
4,104,998	+		RR42_RS18965	0.72	-0.1
4,104,999	-		RR42_RS18965	0.72	-2.2
4,105,132	+		RR42_RS18965	0.89	+0.0
4,105,264	+				+1.7
4,105,265	-				-1.0
4,105,384	+		RR42_RS18970	0.21	+0.6
4,105,384	+		RR42_RS18970	0.21	+0.0
4,105,384	+		RR42_RS18970	0.21	-0.9
4,105,385	-		RR42_RS18970	0.21	-3.0
4,105,390	+		RR42_RS18970	0.21	+0.1
4,105,390	+		RR42_RS18970	0.21	+0.9
4,105,390	+		RR42_RS18970	0.21	-0.2
4,105,391	+		RR42_RS18970	0.21	-1.7
4,105,391	-		RR42_RS18970	0.21	-1.8
4,105,391	-		RR42_RS18970	0.21	-1.0
4,105,528	+		RR42_RS18970	0.38	-0.3
4,105,528	+		RR42_RS18970	0.38	+1.3
4,105,529	-		RR42_RS18970	0.38	-1.5
4,105,529	-		RR42_RS18970	0.38	-2.2
4,105,529	-		RR42_RS18970	0.38	-1.4
4,105,529	-		RR42_RS18970	0.38	-0.9
4,105,529	-		RR42_RS18970	0.38	-1.3
4,105,529	-		RR42_RS18970	0.38	-1.7
4,105,529	-		RR42_RS18970	0.38	-0.9
4,105,691	+		RR42_RS18970	0.58	-0.4
4,105,691	+		RR42_RS18970	0.58	-0.8
4,105,691	+		RR42_RS18970	0.58	-0.2
4,105,692	-		RR42_RS18970	0.58	-2.1
4,105,789	+		RR42_RS18970	0.70	-0.4
4,105,789	+		RR42_RS18970	0.70	-0.7
4,105,790	-		RR42_RS18970	0.70	-1.5
4,105,799	+		RR42_RS18970	0.71	-0.5
4,105,821	-		RR42_RS18970	0.74	-0.4
4,105,949	+		RR42_RS18970	0.89	-0.4
4,105,949	+		RR42_RS18970	0.89	+0.0
4,105,950	-		RR42_RS18970	0.89	-0.7
4,105,950	-		RR42_RS18970	0.89	-0.3
4,105,950	-		RR42_RS18970	0.89	-2.2
4,105,950	-		RR42_RS18970	0.89	-0.4
4,105,950	-		RR42_RS18970	0.89	+0.1
4,105,983	-				-0.1
4,105,984	+				-1.2
4,105,984	+				-0.1
4,105,985	-				+0.2
4,105,985	-				+0.2
4,106,050	+				+2.0
4,106,050	+				-0.1
4,106,051	-				+0.5
4,106,065	+				+0.8
4,106,065	+				-0.5
4,106,065	+				+0.8
4,106,066	-				-1.8
4,106,067	+				+0.1
4,106,067	+				-0.7
4,106,068	-				-0.8
4,106,068	-				-0.3
4,106,074	+				+0.3
4,106,077	+				+0.4
4,106,077	+				+0.5
4,106,077	+				-1.4
4,106,078	-				-0.1
4,106,078	-				-0.5
4,106,078	-				+0.3
4,106,078	-				+0.9
4,106,081	+				+0.6
4,106,081	+				+1.0
4,106,081	+				+0.1
4,106,082	-				-0.4
4,106,082	-				-0.4
4,106,082	-				-0.3
4,106,122	+				-0.8
4,106,122	+				-0.1
4,106,122	+				-0.1
4,106,123	-				+0.1
4,106,123	-				-0.1
4,106,123	-				-0.0
4,106,200	+				-0.2
4,106,201	-				+0.2
4,106,428	-		RR42_RS18975	0.22	+0.2
4,106,655	+		RR42_RS18975	0.42	+1.2
4,106,655	+		RR42_RS18975	0.42	+0.2
4,106,656	-		RR42_RS18975	0.42	-0.1
4,106,656	-		RR42_RS18975	0.42	+0.1
4,106,656	-		RR42_RS18975	0.42	+0.6
4,106,664	+		RR42_RS18975	0.43	+0.0
4,106,664	+		RR42_RS18975	0.43	+0.3
4,106,665	-		RR42_RS18975	0.43	+0.7
4,106,665	-		RR42_RS18975	0.43	+0.7
4,106,665	-		RR42_RS18975	0.43	-0.8
4,106,665	-		RR42_RS18975	0.43	-0.3
4,106,665	-		RR42_RS18975	0.43	+0.6
4,106,700	+		RR42_RS18975	0.46	-0.2
4,106,700	+		RR42_RS18975	0.46	-0.0
4,106,701	-		RR42_RS18975	0.46	-1.3
4,106,701	-		RR42_RS18975	0.46	-0.7
4,106,706	+		RR42_RS18975	0.47	-0.7
4,106,706	+		RR42_RS18975	0.47	+0.6
4,106,706	+		RR42_RS18975	0.47	+0.9
4,106,707	-		RR42_RS18975	0.47	-0.6
4,106,707	-		RR42_RS18975	0.47	+0.1
4,106,707	-		RR42_RS18975	0.47	-0.1
4,106,831	+		RR42_RS18975	0.58	+0.9
4,106,831	+		RR42_RS18975	0.58	+0.7
4,106,831	+		RR42_RS18975	0.58	+0.0
4,106,831	+		RR42_RS18975	0.58	+0.2
4,106,831	+		RR42_RS18975	0.58	-0.4
4,106,831	+		RR42_RS18975	0.58	+0.0
4,106,831	+		RR42_RS18975	0.58	+0.1
4,106,832	-		RR42_RS18975	0.58	+0.1
4,106,832	-		RR42_RS18975	0.58	+1.0
4,106,832	-		RR42_RS18975	0.58	+1.3
4,106,832	-		RR42_RS18975	0.58	+0.2
4,106,838	+		RR42_RS18975	0.59	+0.6
4,106,839	-		RR42_RS18975	0.59	+0.1
4,106,839	-		RR42_RS18975	0.59	-0.1
4,106,839	-		RR42_RS18975	0.59	+0.4
4,106,839	-		RR42_RS18975	0.59	-0.2
4,106,891	+		RR42_RS18975	0.64	+0.6
4,106,891	+		RR42_RS18975	0.64	-0.9
4,106,892	-		RR42_RS18975	0.64	+0.5
4,106,892	-		RR42_RS18975	0.64	+0.8
4,106,892	-		RR42_RS18975	0.64	+1.0
4,106,892	-		RR42_RS18975	0.64	-0.2
4,106,892	-		RR42_RS18975	0.64	+3.3
4,106,895	+		RR42_RS18975	0.64	+0.1
4,106,896	+		RR42_RS18975	0.64	+0.1
4,106,896	+		RR42_RS18975	0.64	+0.4
4,106,896	+		RR42_RS18975	0.64	+0.9
4,106,897	-		RR42_RS18975	0.64	-0.2
4,106,897	-		RR42_RS18975	0.64	+1.0