Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03245

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03240 and RR42_RS03245 are separated by 384 nucleotidesRR42_RS03245 and RR42_RS03250 are separated by 138 nucleotidesRR42_RS03250 and RR42_RS03255 are separated by 39 nucleotides RR42_RS03240: RR42_RS03240 - integrase, at 717,628 to 718,800 _RS03240 RR42_RS03245: RR42_RS03245 - D-alanyl-D-alanine carboxypeptidase, at 719,185 to 720,717 _RS03245 RR42_RS03250: RR42_RS03250 - MarR family transcriptional regulator, at 720,856 to 721,416 _RS03250 RR42_RS03255: RR42_RS03255 - hypothetical protein, at 721,456 to 721,956 _RS03255 Position (kb) 719 720 721Strain fitness (log2 ratio) -2 -1 0 1at 718.815 kb on + strandat 718.834 kb on + strandat 718.977 kb on + strandat 719.264 kb on + strandat 719.264 kb on + strandat 719.265 kb on - strandat 719.265 kb on - strandat 719.280 kb on - strandat 719.306 kb on + strandat 719.307 kb on - strandat 719.351 kb on + strand, within RR42_RS03245at 719.351 kb on + strand, within RR42_RS03245at 719.351 kb on + strand, within RR42_RS03245at 719.351 kb on + strand, within RR42_RS03245at 719.352 kb on - strand, within RR42_RS03245at 719.352 kb on - strand, within RR42_RS03245at 719.481 kb on + strand, within RR42_RS03245at 719.481 kb on + strand, within RR42_RS03245at 719.482 kb on - strand, within RR42_RS03245at 719.482 kb on - strand, within RR42_RS03245at 719.482 kb on - strand, within RR42_RS03245at 719.487 kb on - strand, within RR42_RS03245at 719.487 kb on - strand, within RR42_RS03245at 719.487 kb on - strand, within RR42_RS03245at 719.888 kb on + strand, within RR42_RS03245at 719.888 kb on + strand, within RR42_RS03245at 720.073 kb on - strand, within RR42_RS03245at 720.095 kb on + strand, within RR42_RS03245at 720.096 kb on - strand, within RR42_RS03245at 720.122 kb on + strand, within RR42_RS03245at 720.123 kb on - strand, within RR42_RS03245at 720.179 kb on + strand, within RR42_RS03245at 720.179 kb on + strand, within RR42_RS03245at 720.296 kb on + strand, within RR42_RS03245at 720.296 kb on + strand, within RR42_RS03245at 720.344 kb on + strand, within RR42_RS03245at 720.345 kb on - strand, within RR42_RS03245at 720.488 kb on + strand, within RR42_RS03245at 720.489 kb on - strand, within RR42_RS03245at 720.721 kb on - strandat 721.007 kb on + strand, within RR42_RS03250at 721.218 kb on - strand, within RR42_RS03250at 721.218 kb on - strand, within RR42_RS03250at 721.221 kb on + strand, within RR42_RS03250at 721.457 kb on + strandat 721.458 kb on - strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.459 kb on + strandat 721.460 kb on - strandat 721.583 kb on + strand, within RR42_RS03255at 721.583 kb on + strand, within RR42_RS03255at 721.583 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.670 kb on + strand, within RR42_RS03255at 721.671 kb on - strand, within RR42_RS03255at 721.703 kb on + strand, within RR42_RS03255at 721.703 kb on + strand, within RR42_RS03255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
718,815 + -0.3
718,834 + -0.6
718,977 + +0.1
719,264 + -0.3
719,264 + +0.0
719,265 - -0.0
719,265 - -0.1
719,280 - +0.5
719,306 + +0.6
719,307 - +0.8
719,351 + RR42_RS03245 0.11 +0.4
719,351 + RR42_RS03245 0.11 -0.0
719,351 + RR42_RS03245 0.11 +0.0
719,351 + RR42_RS03245 0.11 +0.5
719,352 - RR42_RS03245 0.11 -1.9
719,352 - RR42_RS03245 0.11 +0.6
719,481 + RR42_RS03245 0.19 -0.6
719,481 + RR42_RS03245 0.19 +0.9
719,482 - RR42_RS03245 0.19 -0.1
719,482 - RR42_RS03245 0.19 -0.1
719,482 - RR42_RS03245 0.19 -1.0
719,487 - RR42_RS03245 0.20 +0.7
719,487 - RR42_RS03245 0.20 -0.5
719,487 - RR42_RS03245 0.20 +0.0
719,888 + RR42_RS03245 0.46 -0.4
719,888 + RR42_RS03245 0.46 -0.2
720,073 - RR42_RS03245 0.58 -0.4
720,095 + RR42_RS03245 0.59 -0.8
720,096 - RR42_RS03245 0.59 -0.6
720,122 + RR42_RS03245 0.61 +0.9
720,123 - RR42_RS03245 0.61 -0.2
720,179 + RR42_RS03245 0.65 -0.4
720,179 + RR42_RS03245 0.65 -0.6
720,296 + RR42_RS03245 0.72 -0.0
720,296 + RR42_RS03245 0.72 -1.6
720,344 + RR42_RS03245 0.76 +0.1
720,345 - RR42_RS03245 0.76 -0.7
720,488 + RR42_RS03245 0.85 -0.4
720,489 - RR42_RS03245 0.85 +1.7
720,721 - +0.2
721,007 + RR42_RS03250 0.27 +0.1
721,218 - RR42_RS03250 0.65 -0.9
721,218 - RR42_RS03250 0.65 -1.7
721,221 + RR42_RS03250 0.65 +0.2
721,457 + +0.2
721,458 - +0.7
721,459 + -0.8
721,459 + -0.3
721,459 + -0.9
721,459 + -1.0
721,459 + -0.1
721,460 - -1.1
721,583 + RR42_RS03255 0.25 -0.0
721,583 + RR42_RS03255 0.25 -0.6
721,583 + RR42_RS03255 0.25 +0.6
721,670 + RR42_RS03255 0.43 +0.9
721,670 + RR42_RS03255 0.43 +0.6
721,670 + RR42_RS03255 0.43 -0.4
721,670 + RR42_RS03255 0.43 +0.7
721,671 - RR42_RS03255 0.43 +0.6
721,703 + RR42_RS03255 0.49 +0.0
721,703 + RR42_RS03255 0.49 +0.9

Or see this region's nucleotide sequence