Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4826

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4825 and Psyr_4826 are separated by 34 nucleotides Psyr_4825: Psyr_4825 - xenobiotic compound monooxygenase, DszA family, A subunit, at 5,722,745 to 5,724,070 _4825 Psyr_4826: Psyr_4826 - TonB-dependent receptor:TonB box, N-terminal, at 5,724,105 to 5,726,372 _4826 Position (kb) 5724 5725 5726 5727Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5723.317 kb on - strand, within Psyr_4825at 5723.317 kb on - strand, within Psyr_4825at 5723.518 kb on - strand, within Psyr_4825at 5723.518 kb on - strand, within Psyr_4825at 5723.741 kb on + strand, within Psyr_4825at 5723.742 kb on - strand, within Psyr_4825at 5723.760 kb on + strand, within Psyr_4825at 5723.760 kb on + strand, within Psyr_4825at 5723.760 kb on + strand, within Psyr_4825at 5723.760 kb on + strand, within Psyr_4825at 5723.760 kb on + strand, within Psyr_4825at 5723.760 kb on + strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.761 kb on - strand, within Psyr_4825at 5723.791 kb on + strand, within Psyr_4825at 5723.792 kb on - strand, within Psyr_4825at 5724.070 kb on + strandat 5724.070 kb on + strandat 5724.070 kb on + strandat 5724.071 kb on - strandat 5724.071 kb on - strandat 5724.082 kb on + strandat 5724.082 kb on + strandat 5724.082 kb on + strandat 5724.136 kb on + strandat 5724.172 kb on + strandat 5724.172 kb on + strandat 5724.172 kb on + strandat 5724.172 kb on + strandat 5724.172 kb on + strandat 5724.172 kb on + strandat 5724.172 kb on + strandat 5724.172 kb on + strandat 5724.173 kb on - strandat 5724.173 kb on - strandat 5724.173 kb on - strandat 5724.173 kb on - strandat 5724.173 kb on - strandat 5724.173 kb on - strandat 5724.203 kb on - strandat 5724.256 kb on + strandat 5724.257 kb on - strandat 5724.257 kb on - strandat 5724.332 kb on - strand, within Psyr_4826at 5724.332 kb on - strand, within Psyr_4826at 5724.355 kb on + strand, within Psyr_4826at 5724.355 kb on + strand, within Psyr_4826at 5724.355 kb on + strand, within Psyr_4826at 5724.403 kb on + strand, within Psyr_4826at 5724.403 kb on + strand, within Psyr_4826at 5724.404 kb on - strand, within Psyr_4826at 5724.418 kb on + strand, within Psyr_4826at 5724.418 kb on + strand, within Psyr_4826at 5724.418 kb on + strand, within Psyr_4826at 5724.418 kb on + strand, within Psyr_4826at 5724.419 kb on - strand, within Psyr_4826at 5724.419 kb on - strand, within Psyr_4826at 5724.520 kb on + strand, within Psyr_4826at 5724.521 kb on - strand, within Psyr_4826at 5724.661 kb on + strand, within Psyr_4826at 5724.661 kb on + strand, within Psyr_4826at 5724.661 kb on + strand, within Psyr_4826at 5724.661 kb on + strand, within Psyr_4826at 5724.661 kb on + strand, within Psyr_4826at 5724.662 kb on - strand, within Psyr_4826at 5724.662 kb on - strand, within Psyr_4826at 5724.662 kb on - strand, within Psyr_4826at 5724.662 kb on - strand, within Psyr_4826at 5724.662 kb on - strand, within Psyr_4826at 5724.662 kb on - strand, within Psyr_4826at 5724.670 kb on + strand, within Psyr_4826at 5724.670 kb on + strand, within Psyr_4826at 5724.671 kb on - strand, within Psyr_4826at 5724.808 kb on + strand, within Psyr_4826at 5724.808 kb on + strand, within Psyr_4826at 5724.808 kb on + strand, within Psyr_4826at 5724.808 kb on + strand, within Psyr_4826at 5724.835 kb on + strand, within Psyr_4826at 5724.836 kb on - strand, within Psyr_4826at 5724.836 kb on - strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.844 kb on + strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.845 kb on - strand, within Psyr_4826at 5724.985 kb on + strand, within Psyr_4826at 5724.985 kb on + strand, within Psyr_4826at 5724.986 kb on - strand, within Psyr_4826at 5724.986 kb on - strand, within Psyr_4826at 5724.986 kb on - strand, within Psyr_4826at 5724.986 kb on - strand, within Psyr_4826at 5725.072 kb on + strand, within Psyr_4826at 5725.072 kb on + strand, within Psyr_4826at 5725.093 kb on + strand, within Psyr_4826at 5725.094 kb on - strand, within Psyr_4826at 5725.094 kb on - strand, within Psyr_4826at 5725.094 kb on - strand, within Psyr_4826at 5725.094 kb on - strand, within Psyr_4826at 5725.144 kb on + strand, within Psyr_4826at 5725.144 kb on + strand, within Psyr_4826at 5725.144 kb on + strand, within Psyr_4826at 5725.144 kb on + strand, within Psyr_4826at 5725.144 kb on + strand, within Psyr_4826at 5725.145 kb on - strand, within Psyr_4826at 5725.171 kb on + strand, within Psyr_4826at 5725.171 kb on + strand, within Psyr_4826at 5725.171 kb on + strand, within Psyr_4826at 5725.171 kb on + strand, within Psyr_4826at 5725.171 kb on + strand, within Psyr_4826at 5725.171 kb on + strand, within Psyr_4826at 5725.171 kb on + strand, within Psyr_4826at 5725.172 kb on - strand, within Psyr_4826at 5725.172 kb on - strand, within Psyr_4826at 5725.172 kb on - strand, within Psyr_4826at 5725.172 kb on - strand, within Psyr_4826at 5725.366 kb on + strand, within Psyr_4826at 5725.366 kb on + strand, within Psyr_4826at 5725.366 kb on + strand, within Psyr_4826at 5725.367 kb on - strand, within Psyr_4826at 5725.367 kb on - strand, within Psyr_4826at 5725.471 kb on - strand, within Psyr_4826at 5725.552 kb on + strand, within Psyr_4826at 5725.552 kb on + strand, within Psyr_4826at 5725.552 kb on + strand, within Psyr_4826at 5725.553 kb on - strand, within Psyr_4826at 5725.553 kb on - strand, within Psyr_4826at 5725.553 kb on - strand, within Psyr_4826at 5725.553 kb on - strand, within Psyr_4826at 5725.553 kb on - strand, within Psyr_4826at 5725.627 kb on + strand, within Psyr_4826at 5725.675 kb on + strand, within Psyr_4826at 5725.675 kb on + strand, within Psyr_4826at 5725.675 kb on + strand, within Psyr_4826at 5725.675 kb on + strand, within Psyr_4826at 5725.676 kb on - strand, within Psyr_4826at 5725.676 kb on - strand, within Psyr_4826at 5725.676 kb on - strand, within Psyr_4826at 5725.676 kb on - strand, within Psyr_4826at 5725.676 kb on - strand, within Psyr_4826at 5725.676 kb on - strand, within Psyr_4826at 5725.676 kb on - strand, within Psyr_4826at 5725.768 kb on + strand, within Psyr_4826at 5725.769 kb on - strand, within Psyr_4826at 5725.771 kb on + strand, within Psyr_4826at 5725.771 kb on + strand, within Psyr_4826at 5725.771 kb on + strand, within Psyr_4826at 5725.771 kb on + strand, within Psyr_4826at 5725.772 kb on - strand, within Psyr_4826at 5725.772 kb on - strand, within Psyr_4826at 5725.786 kb on + strand, within Psyr_4826at 5725.786 kb on + strand, within Psyr_4826at 5725.786 kb on + strand, within Psyr_4826at 5725.786 kb on + strand, within Psyr_4826at 5725.787 kb on - strand, within Psyr_4826at 5725.787 kb on - strand, within Psyr_4826at 5725.787 kb on - strand, within Psyr_4826at 5725.787 kb on - strand, within Psyr_4826at 5725.881 kb on + strand, within Psyr_4826at 5725.882 kb on - strand, within Psyr_4826at 5725.882 kb on - strand, within Psyr_4826at 5725.882 kb on - strand, within Psyr_4826at 5725.905 kb on + strand, within Psyr_4826at 5725.905 kb on + strand, within Psyr_4826at 5725.905 kb on + strand, within Psyr_4826at 5725.906 kb on - strand, within Psyr_4826at 5725.936 kb on + strand, within Psyr_4826at 5725.936 kb on + strand, within Psyr_4826at 5725.936 kb on + strand, within Psyr_4826at 5725.936 kb on + strand, within Psyr_4826at 5725.936 kb on + strand, within Psyr_4826at 5725.937 kb on - strand, within Psyr_4826at 5725.937 kb on - strand, within Psyr_4826at 5725.937 kb on - strand, within Psyr_4826at 5726.382 kb on + strandat 5726.391 kb on + strandat 5726.391 kb on + strandat 5726.392 kb on - strandat 5726.392 kb on - strandat 5726.392 kb on - strandat 5726.392 kb on - strandat 5726.392 kb on - strandat 5726.441 kb on + strandat 5726.442 kb on - strandat 5726.499 kb on + strandat 5727.036 kb on + strandat 5727.036 kb on + strandat 5727.036 kb on + strandat 5727.321 kb on + strandat 5727.321 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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5,723,317 - Psyr_4825 0.43 +0.9
5,723,317 - Psyr_4825 0.43 +0.1
5,723,518 - Psyr_4825 0.58 +0.0
5,723,518 - Psyr_4825 0.58 +0.3
5,723,741 + Psyr_4825 0.75 +1.1
5,723,742 - Psyr_4825 0.75 -0.7
5,723,760 + Psyr_4825 0.77 -0.0
5,723,760 + Psyr_4825 0.77 +0.2
5,723,760 + Psyr_4825 0.77 +1.7
5,723,760 + Psyr_4825 0.77 +0.0
5,723,760 + Psyr_4825 0.77 +0.1
5,723,760 + Psyr_4825 0.77 +0.9
5,723,761 - Psyr_4825 0.77 +0.1
5,723,761 - Psyr_4825 0.77 -0.4
5,723,761 - Psyr_4825 0.77 +0.0
5,723,761 - Psyr_4825 0.77 +1.6
5,723,761 - Psyr_4825 0.77 +0.5
5,723,761 - Psyr_4825 0.77 -0.3
5,723,761 - Psyr_4825 0.77 +0.9
5,723,761 - Psyr_4825 0.77 +0.7
5,723,761 - Psyr_4825 0.77 -0.7
5,723,791 + Psyr_4825 0.79 +1.0
5,723,792 - Psyr_4825 0.79 +0.6
5,724,070 + +0.3
5,724,070 + -0.4
5,724,070 + -0.9
5,724,071 - -0.8
5,724,071 - -0.6
5,724,082 + +0.7
5,724,082 + +1.3
5,724,082 + +0.6
5,724,136 + +0.4
5,724,172 + +0.9
5,724,172 + +0.9
5,724,172 + +1.3
5,724,172 + +0.1
5,724,172 + +1.3
5,724,172 + -0.6
5,724,172 + +0.2
5,724,172 + +0.4
5,724,173 - +0.2
5,724,173 - -1.8
5,724,173 - -0.1
5,724,173 - -0.6
5,724,173 - +0.4
5,724,173 - -0.4
5,724,203 - +0.9
5,724,256 + +0.1
5,724,257 - +1.5
5,724,257 - +0.0
5,724,332 - Psyr_4826 0.10 -0.4
5,724,332 - Psyr_4826 0.10 -0.7
5,724,355 + Psyr_4826 0.11 +0.3
5,724,355 + Psyr_4826 0.11 -1.2
5,724,355 + Psyr_4826 0.11 -0.7
5,724,403 + Psyr_4826 0.13 -1.8
5,724,403 + Psyr_4826 0.13 +0.0
5,724,404 - Psyr_4826 0.13 -0.1
5,724,418 + Psyr_4826 0.14 +0.6
5,724,418 + Psyr_4826 0.14 -0.7
5,724,418 + Psyr_4826 0.14 +1.2
5,724,418 + Psyr_4826 0.14 +0.3
5,724,419 - Psyr_4826 0.14 -0.8
5,724,419 - Psyr_4826 0.14 +2.1
5,724,520 + Psyr_4826 0.18 +1.2
5,724,521 - Psyr_4826 0.18 -0.0
5,724,661 + Psyr_4826 0.25 +0.2
5,724,661 + Psyr_4826 0.25 +0.1
5,724,661 + Psyr_4826 0.25 +1.3
5,724,661 + Psyr_4826 0.25 +0.8
5,724,661 + Psyr_4826 0.25 +0.9
5,724,662 - Psyr_4826 0.25 +0.1
5,724,662 - Psyr_4826 0.25 -0.4
5,724,662 - Psyr_4826 0.25 -1.4
5,724,662 - Psyr_4826 0.25 +0.6
5,724,662 - Psyr_4826 0.25 -0.3
5,724,662 - Psyr_4826 0.25 -0.8
5,724,670 + Psyr_4826 0.25 -1.8
5,724,670 + Psyr_4826 0.25 -0.5
5,724,671 - Psyr_4826 0.25 +0.6
5,724,808 + Psyr_4826 0.31 -1.7
5,724,808 + Psyr_4826 0.31 +0.0
5,724,808 + Psyr_4826 0.31 +0.4
5,724,808 + Psyr_4826 0.31 +0.2
5,724,835 + Psyr_4826 0.32 -0.6
5,724,836 - Psyr_4826 0.32 -0.6
5,724,836 - Psyr_4826 0.32 +0.6
5,724,844 + Psyr_4826 0.33 -1.3
5,724,844 + Psyr_4826 0.33 +0.6
5,724,844 + Psyr_4826 0.33 -0.3
5,724,844 + Psyr_4826 0.33 -0.6
5,724,844 + Psyr_4826 0.33 +0.2
5,724,844 + Psyr_4826 0.33 -1.2
5,724,844 + Psyr_4826 0.33 +0.1
5,724,844 + Psyr_4826 0.33 +2.4
5,724,844 + Psyr_4826 0.33 -0.5
5,724,844 + Psyr_4826 0.33 +0.7
5,724,845 - Psyr_4826 0.33 +3.1
5,724,845 - Psyr_4826 0.33 -1.2
5,724,845 - Psyr_4826 0.33 +0.9
5,724,845 - Psyr_4826 0.33 -1.4
5,724,845 - Psyr_4826 0.33 +0.3
5,724,845 - Psyr_4826 0.33 +0.4
5,724,845 - Psyr_4826 0.33 +1.3
5,724,845 - Psyr_4826 0.33 +0.1
5,724,845 - Psyr_4826 0.33 +0.2
5,724,845 - Psyr_4826 0.33 -0.1
5,724,845 - Psyr_4826 0.33 +0.8
5,724,845 - Psyr_4826 0.33 +1.8
5,724,845 - Psyr_4826 0.33 -0.5
5,724,845 - Psyr_4826 0.33 -0.4
5,724,845 - Psyr_4826 0.33 +1.1
5,724,845 - Psyr_4826 0.33 +1.7
5,724,845 - Psyr_4826 0.33 +0.4
5,724,845 - Psyr_4826 0.33 -0.5
5,724,985 + Psyr_4826 0.39 -1.0
5,724,985 + Psyr_4826 0.39 +0.3
5,724,986 - Psyr_4826 0.39 -0.2
5,724,986 - Psyr_4826 0.39 -2.1
5,724,986 - Psyr_4826 0.39 -0.2
5,724,986 - Psyr_4826 0.39 +0.2
5,725,072 + Psyr_4826 0.43 +0.9
5,725,072 + Psyr_4826 0.43 +0.4
5,725,093 + Psyr_4826 0.44 -0.5
5,725,094 - Psyr_4826 0.44 -0.2
5,725,094 - Psyr_4826 0.44 +1.3
5,725,094 - Psyr_4826 0.44 -0.0
5,725,094 - Psyr_4826 0.44 +1.9
5,725,144 + Psyr_4826 0.46 +0.1
5,725,144 + Psyr_4826 0.46 +0.3
5,725,144 + Psyr_4826 0.46 +1.2
5,725,144 + Psyr_4826 0.46 +0.5
5,725,144 + Psyr_4826 0.46 -0.5
5,725,145 - Psyr_4826 0.46 -0.3
5,725,171 + Psyr_4826 0.47 -0.5
5,725,171 + Psyr_4826 0.47 -1.4
5,725,171 + Psyr_4826 0.47 -0.7
5,725,171 + Psyr_4826 0.47 -0.1
5,725,171 + Psyr_4826 0.47 +0.9
5,725,171 + Psyr_4826 0.47 -0.0
5,725,171 + Psyr_4826 0.47 +0.9
5,725,172 - Psyr_4826 0.47 +0.1
5,725,172 - Psyr_4826 0.47 +0.2
5,725,172 - Psyr_4826 0.47 -1.1
5,725,172 - Psyr_4826 0.47 +0.9
5,725,366 + Psyr_4826 0.56 +1.4
5,725,366 + Psyr_4826 0.56 +0.0
5,725,366 + Psyr_4826 0.56 +0.2
5,725,367 - Psyr_4826 0.56 -0.2
5,725,367 - Psyr_4826 0.56 +0.4
5,725,471 - Psyr_4826 0.60 +0.0
5,725,552 + Psyr_4826 0.64 +3.2
5,725,552 + Psyr_4826 0.64 -0.3
5,725,552 + Psyr_4826 0.64 +0.5
5,725,553 - Psyr_4826 0.64 -0.5
5,725,553 - Psyr_4826 0.64 +0.5
5,725,553 - Psyr_4826 0.64 +0.2
5,725,553 - Psyr_4826 0.64 -0.5
5,725,553 - Psyr_4826 0.64 -1.7
5,725,627 + Psyr_4826 0.67 +0.2
5,725,675 + Psyr_4826 0.69 -0.5
5,725,675 + Psyr_4826 0.69 +0.9
5,725,675 + Psyr_4826 0.69 -0.2
5,725,675 + Psyr_4826 0.69 +0.3
5,725,676 - Psyr_4826 0.69 +0.1
5,725,676 - Psyr_4826 0.69 +0.6
5,725,676 - Psyr_4826 0.69 +0.9
5,725,676 - Psyr_4826 0.69 +0.9
5,725,676 - Psyr_4826 0.69 +0.8
5,725,676 - Psyr_4826 0.69 -1.2
5,725,676 - Psyr_4826 0.69 +0.5
5,725,768 + Psyr_4826 0.73 -0.7
5,725,769 - Psyr_4826 0.73 +0.9
5,725,771 + Psyr_4826 0.73 -0.2
5,725,771 + Psyr_4826 0.73 -0.1
5,725,771 + Psyr_4826 0.73 +1.4
5,725,771 + Psyr_4826 0.73 -0.1
5,725,772 - Psyr_4826 0.74 -0.6
5,725,772 - Psyr_4826 0.74 -0.3
5,725,786 + Psyr_4826 0.74 -0.9
5,725,786 + Psyr_4826 0.74 -0.9
5,725,786 + Psyr_4826 0.74 +0.0
5,725,786 + Psyr_4826 0.74 -0.7
5,725,787 - Psyr_4826 0.74 +0.2
5,725,787 - Psyr_4826 0.74 -0.8
5,725,787 - Psyr_4826 0.74 +0.6
5,725,787 - Psyr_4826 0.74 +0.7
5,725,881 + Psyr_4826 0.78 +0.3
5,725,882 - Psyr_4826 0.78 -0.9
5,725,882 - Psyr_4826 0.78 +0.8
5,725,882 - Psyr_4826 0.78 -1.3
5,725,905 + Psyr_4826 0.79 -0.1
5,725,905 + Psyr_4826 0.79 -0.9
5,725,905 + Psyr_4826 0.79 +0.9
5,725,906 - Psyr_4826 0.79 -0.5
5,725,936 + Psyr_4826 0.81 +0.4
5,725,936 + Psyr_4826 0.81 -1.2
5,725,936 + Psyr_4826 0.81 +0.6
5,725,936 + Psyr_4826 0.81 +0.7
5,725,936 + Psyr_4826 0.81 +0.4
5,725,937 - Psyr_4826 0.81 +0.6
5,725,937 - Psyr_4826 0.81 -0.4
5,725,937 - Psyr_4826 0.81 +0.1
5,726,382 + +0.1
5,726,391 + +1.5
5,726,391 + -1.9
5,726,392 - +0.6
5,726,392 - -0.6
5,726,392 - +0.9
5,726,392 - -0.7
5,726,392 - +0.1
5,726,441 + -1.2
5,726,442 - -1.1
5,726,499 + -0.6
5,727,036 + +0.9
5,727,036 + -1.1
5,727,036 + +2.1
5,727,321 + +0.7
5,727,321 + -0.4

Or see this region's nucleotide sequence