Experiment: KB with Phloretin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4202 and Psyr_4203 are separated by 80 nucleotides Psyr_4203 and Psyr_4204 are separated by 307 nucleotides Psyr_4204 and Psyr_4205 are separated by 770 nucleotides
Psyr_4202: Psyr_4202 - Sodium:neurotransmitter symporter, at 4,997,122 to 4,998,558
_4202
Psyr_4203: Psyr_4203 - SsrA-binding protein, at 4,998,639 to 4,999,121
_4203
Psyr_4204: Psyr_4204 - conserved hypothetical protein, at 4,999,429 to 4,999,713
_4204
Psyr_4205: Psyr_4205 - insecticidal toxin complex protein TcdA1, at 5,000,484 to 5,007,992
_4205
Position (kb) 4999
5000 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.625 kb on - strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.683 kb on + strand at 4998.702 kb on + strand, within Psyr_4203 at 4998.702 kb on + strand, within Psyr_4203 at 4998.779 kb on - strand, within Psyr_4203 at 4998.795 kb on + strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4999.119 kb on + strand at 4999.119 kb on + strand at 4999.120 kb on - strand at 4999.174 kb on + strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.179 kb on - strand at 4999.179 kb on - strand at 4999.280 kb on + strand at 4999.281 kb on - strand at 4999.291 kb on - strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.307 kb on - strand at 4999.307 kb on - strand at 4999.414 kb on + strand at 4999.414 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.548 kb on + strand, within Psyr_4204 at 4999.548 kb on + strand, within Psyr_4204 at 4999.711 kb on + strand at 4999.711 kb on + strand at 4999.712 kb on - strand at 4999.712 kb on - strand at 4999.887 kb on + strand at 4999.909 kb on + strand at 4999.911 kb on + strand at 5000.015 kb on + strand at 5000.037 kb on + strand at 5000.037 kb on + strand at 5000.055 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.059 kb on - strand at 5000.059 kb on - strand at 5000.156 kb on + strand at 5000.156 kb on + strand at 5000.267 kb on + strand at 5000.267 kb on + strand at 5000.295 kb on + strand at 5000.296 kb on - strand at 5000.319 kb on + strand at 5000.334 kb on - strand at 5000.334 kb on - strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.387 kb on + strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.388 kb on - strand at 5000.390 kb on + strand at 5000.390 kb on + strand at 5000.390 kb on + strand at 5000.390 kb on + strand at 5000.391 kb on - strand at 5000.391 kb on - strand at 5000.433 kb on + strand at 5000.434 kb on - strand at 5000.485 kb on + strand at 5000.485 kb on + strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.486 kb on - strand at 5000.487 kb on + strand at 5000.487 kb on + strand at 5000.488 kb on - strand at 5000.488 kb on - strand at 5000.503 kb on + strand at 5000.503 kb on + strand at 5000.504 kb on - strand at 5000.504 kb on - strand at 5000.600 kb on + strand at 5000.601 kb on - strand at 5000.636 kb on + strand at 5000.637 kb on - strand at 5000.637 kb on - strand at 5000.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml remove 4,998,624 + +0.6 4,998,624 + +0.3 4,998,624 + -2.7 4,998,624 + -1.4 4,998,625 - -0.3 4,998,626 + -0.9 4,998,626 + -2.1 4,998,626 + -1.3 4,998,683 + -0.9 4,998,702 + Psyr_4203 0.13 -0.7 4,998,702 + Psyr_4203 0.13 -2.1 4,998,779 - Psyr_4203 0.29 -0.6 4,998,795 + Psyr_4203 0.32 -0.3 4,998,796 - Psyr_4203 0.33 -0.9 4,998,796 - Psyr_4203 0.33 -0.9 4,999,119 + -1.0 4,999,119 + +0.0 4,999,120 - +0.6 4,999,174 + -1.3 4,999,175 - -0.5 4,999,175 - +1.5 4,999,175 - -0.5 4,999,175 - +0.1 4,999,175 - -0.6 4,999,175 - -0.5 4,999,175 - +0.4 4,999,175 - +0.7 4,999,175 - -0.6 4,999,179 - -1.1 4,999,179 - +0.3 4,999,280 + +1.9 4,999,281 - -0.5 4,999,291 - +3.3 4,999,306 + +0.4 4,999,306 + -0.1 4,999,306 + -0.3 4,999,307 - +0.8 4,999,307 - +0.7 4,999,414 + -0.3 4,999,414 + +0.5 4,999,428 + +0.2 4,999,428 + -1.3 4,999,428 + +1.7 4,999,428 + +1.9 4,999,428 + +0.7 4,999,428 + +0.1 4,999,428 + +0.7 4,999,428 + +0.3 4,999,428 + +0.2 4,999,428 + -0.2 4,999,428 + +0.3 4,999,428 + -2.3 4,999,428 + +0.1 4,999,428 + +1.1 4,999,428 + -0.2 4,999,428 + -0.3 4,999,428 + -0.2 4,999,429 - +0.6 4,999,429 - +0.1 4,999,429 - +0.4 4,999,429 - +0.2 4,999,429 - -1.2 4,999,429 - -0.8 4,999,429 - +0.4 4,999,429 - +3.0 4,999,429 - +1.7 4,999,429 - -0.9 4,999,429 - +0.7 4,999,429 - -2.1 4,999,429 - +1.1 4,999,429 - +0.3 4,999,429 - +1.0 4,999,429 - +0.5 4,999,429 - +0.1 4,999,429 - +0.7 4,999,429 - -1.1 4,999,548 + Psyr_4204 0.42 -2.3 4,999,548 + Psyr_4204 0.42 +1.0 4,999,711 + +0.6 4,999,711 + -0.3 4,999,712 - +0.1 4,999,712 - +0.1 4,999,887 + +0.7 4,999,909 + -0.3 4,999,911 + +0.7 5,000,015 + +0.1 5,000,037 + -2.1 5,000,037 + -0.3 5,000,055 + -0.1 5,000,058 + -1.1 5,000,058 + -0.6 5,000,058 + -1.9 5,000,058 + +0.1 5,000,058 + -1.3 5,000,058 + +0.1 5,000,058 + +0.1 5,000,059 - -2.3 5,000,059 - -1.6 5,000,156 + -0.9 5,000,156 + -1.9 5,000,267 + -2.0 5,000,267 + -0.2 5,000,295 + +0.7 5,000,296 - -1.9 5,000,319 + +1.0 5,000,334 - -0.2 5,000,334 - +0.6 5,000,387 + -0.1 5,000,387 + +0.9 5,000,387 + +0.6 5,000,387 + +0.9 5,000,387 + -1.5 5,000,387 + +0.3 5,000,387 + -1.1 5,000,387 + -1.0 5,000,387 + +0.0 5,000,387 + -0.5 5,000,387 + -0.8 5,000,387 + -0.1 5,000,388 - -0.6 5,000,388 - +0.3 5,000,388 - -0.0 5,000,388 - -0.9 5,000,388 - -0.7 5,000,388 - +0.4 5,000,388 - +0.0 5,000,388 - -0.3 5,000,388 - -1.1 5,000,388 - +1.5 5,000,388 - -1.4 5,000,388 - -0.7 5,000,390 + -0.6 5,000,390 + -0.1 5,000,390 + -1.1 5,000,390 + +1.3 5,000,391 - -0.0 5,000,391 - -0.4 5,000,433 + -0.5 5,000,434 - -0.9 5,000,485 + -0.6 5,000,485 + +0.6 5,000,486 - +0.2 5,000,486 - -1.4 5,000,486 - +0.4 5,000,486 - -1.2 5,000,486 - +1.0 5,000,486 - -0.2 5,000,487 + -0.5 5,000,487 + +0.0 5,000,488 - +1.5 5,000,488 - +0.7 5,000,503 + +1.0 5,000,503 + +2.3 5,000,504 - -0.3 5,000,504 - -0.1 5,000,600 + -1.0 5,000,601 - +0.3 5,000,636 + -0.1 5,000,637 - +0.1 5,000,637 - -0.5 5,000,707 - +0.9
Or see this region's nucleotide sequence