Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4019

Experiment: KB with Phloretin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4018 and Psyr_4019 are separated by 358 nucleotidesPsyr_4019 and Psyr_4020 are separated by 73 nucleotides Psyr_4018: Psyr_4018 - Formyltetrahydrofolate deformylase, at 4,785,483 to 4,786,334 _4018 Psyr_4019: Psyr_4019 - H-NS family protein MvaT, at 4,786,693 to 4,787,073 _4019 Psyr_4020: Psyr_4020 - Exodeoxyribonuclease I subunit C, at 4,787,147 to 4,788,577 _4020 Position (kb) 4786 4787 4788Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4785.724 kb on + strand, within Psyr_4018at 4785.823 kb on + strand, within Psyr_4018at 4785.824 kb on - strand, within Psyr_4018at 4785.824 kb on - strand, within Psyr_4018at 4785.824 kb on - strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.922 kb on + strand, within Psyr_4018at 4785.923 kb on - strand, within Psyr_4018at 4785.923 kb on - strand, within Psyr_4018at 4785.925 kb on + strand, within Psyr_4018at 4785.925 kb on + strand, within Psyr_4018at 4785.925 kb on + strand, within Psyr_4018at 4785.926 kb on - strand, within Psyr_4018at 4786.293 kb on + strandat 4786.293 kb on + strandat 4786.293 kb on + strandat 4786.294 kb on - strandat 4786.294 kb on - strandat 4786.371 kb on + strandat 4786.372 kb on - strandat 4786.396 kb on + strandat 4786.396 kb on + strandat 4786.396 kb on + strandat 4786.397 kb on - strandat 4786.506 kb on - strandat 4786.506 kb on - strandat 4786.517 kb on + strandat 4786.518 kb on - strandat 4786.518 kb on - strandat 4786.518 kb on - strandat 4786.570 kb on + strandat 4786.581 kb on + strandat 4786.581 kb on + strandat 4786.581 kb on + strandat 4786.582 kb on - strandat 4786.582 kb on - strandat 4786.582 kb on - strandat 4786.611 kb on + strandat 4786.615 kb on + strandat 4786.634 kb on + strandat 4786.643 kb on + strandat 4786.643 kb on + strandat 4786.646 kb on + strandat 4786.646 kb on + strandat 4786.681 kb on + strandat 4786.681 kb on + strandat 4786.681 kb on + strandat 4786.681 kb on + strandat 4786.682 kb on - strandat 4786.682 kb on - strandat 4786.883 kb on + strand, within Psyr_4019at 4786.884 kb on - strand, within Psyr_4019at 4786.911 kb on + strand, within Psyr_4019at 4786.912 kb on - strand, within Psyr_4019at 4786.951 kb on + strand, within Psyr_4019at 4786.951 kb on + strand, within Psyr_4019at 4786.951 kb on + strand, within Psyr_4019at 4786.951 kb on + strand, within Psyr_4019at 4786.952 kb on - strand, within Psyr_4019at 4786.952 kb on - strand, within Psyr_4019at 4786.952 kb on - strand, within Psyr_4019at 4787.151 kb on - strandat 4787.199 kb on - strandat 4787.240 kb on + strandat 4787.362 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.499 kb on + strand, within Psyr_4020at 4787.500 kb on - strand, within Psyr_4020at 4787.500 kb on - strand, within Psyr_4020at 4787.500 kb on - strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.501 kb on + strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.502 kb on - strand, within Psyr_4020at 4787.547 kb on + strand, within Psyr_4020at 4787.548 kb on - strand, within Psyr_4020at 4787.693 kb on + strand, within Psyr_4020at 4787.693 kb on + strand, within Psyr_4020at 4787.694 kb on - strand, within Psyr_4020at 4787.694 kb on - strand, within Psyr_4020at 4787.695 kb on + strand, within Psyr_4020at 4787.695 kb on + strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.696 kb on - strand, within Psyr_4020at 4787.752 kb on + strand, within Psyr_4020at 4787.752 kb on + strand, within Psyr_4020at 4787.752 kb on + strand, within Psyr_4020at 4787.753 kb on - strand, within Psyr_4020at 4787.753 kb on - strand, within Psyr_4020at 4787.753 kb on - strand, within Psyr_4020at 4787.753 kb on - strand, within Psyr_4020at 4787.754 kb on + strand, within Psyr_4020at 4787.754 kb on + strand, within Psyr_4020at 4787.754 kb on + strand, within Psyr_4020at 4787.754 kb on + strand, within Psyr_4020at 4787.755 kb on - strand, within Psyr_4020at 4787.755 kb on - strand, within Psyr_4020at 4787.755 kb on - strand, within Psyr_4020at 4787.756 kb on + strand, within Psyr_4020at 4787.756 kb on + strand, within Psyr_4020at 4787.757 kb on - strand, within Psyr_4020at 4787.757 kb on - strand, within Psyr_4020at 4787.757 kb on - strand, within Psyr_4020at 4787.771 kb on + strand, within Psyr_4020at 4787.772 kb on - strand, within Psyr_4020at 4787.772 kb on - strand, within Psyr_4020at 4787.880 kb on + strand, within Psyr_4020at 4787.881 kb on - strand, within Psyr_4020at 4787.881 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.979 kb on + strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.985 kb on + strand, within Psyr_4020at 4787.986 kb on - strand, within Psyr_4020at 4787.986 kb on - strand, within Psyr_4020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
remove
4,785,724 + Psyr_4018 0.28 +0.1
4,785,823 + Psyr_4018 0.40 +0.3
4,785,824 - Psyr_4018 0.40 +0.1
4,785,824 - Psyr_4018 0.40 -1.7
4,785,824 - Psyr_4018 0.40 +0.7
4,785,922 + Psyr_4018 0.52 +0.3
4,785,922 + Psyr_4018 0.52 -0.2
4,785,922 + Psyr_4018 0.52 -1.7
4,785,922 + Psyr_4018 0.52 -0.4
4,785,922 + Psyr_4018 0.52 +0.1
4,785,922 + Psyr_4018 0.52 -0.9
4,785,922 + Psyr_4018 0.52 +0.3
4,785,922 + Psyr_4018 0.52 +0.4
4,785,922 + Psyr_4018 0.52 -0.9
4,785,923 - Psyr_4018 0.52 +0.7
4,785,923 - Psyr_4018 0.52 +0.7
4,785,925 + Psyr_4018 0.52 -0.9
4,785,925 + Psyr_4018 0.52 -0.6
4,785,925 + Psyr_4018 0.52 -0.9
4,785,926 - Psyr_4018 0.52 -1.7
4,786,293 + +2.5
4,786,293 + +0.2
4,786,293 + -0.7
4,786,294 - -0.5
4,786,294 - -0.4
4,786,371 + +0.2
4,786,372 - -0.3
4,786,396 + +1.0
4,786,396 + +0.0
4,786,396 + +1.1
4,786,397 - +0.0
4,786,506 - -0.7
4,786,506 - -1.2
4,786,517 + -0.1
4,786,518 - +0.4
4,786,518 - +0.7
4,786,518 - +1.0
4,786,570 + -0.3
4,786,581 + -0.3
4,786,581 + +0.1
4,786,581 + +0.1
4,786,582 - -2.5
4,786,582 - -0.1
4,786,582 - -1.2
4,786,611 + -0.3
4,786,615 + -1.5
4,786,634 + -1.0
4,786,643 + +0.5
4,786,643 + +0.5
4,786,646 + -1.9
4,786,646 + +0.7
4,786,681 + -0.1
4,786,681 + -1.7
4,786,681 + +0.7
4,786,681 + -0.3
4,786,682 - -1.3
4,786,682 - -2.9
4,786,883 + Psyr_4019 0.50 -1.5
4,786,884 - Psyr_4019 0.50 -0.5
4,786,911 + Psyr_4019 0.57 -0.8
4,786,912 - Psyr_4019 0.57 -0.9
4,786,951 + Psyr_4019 0.68 -1.1
4,786,951 + Psyr_4019 0.68 -2.5
4,786,951 + Psyr_4019 0.68 -1.7
4,786,951 + Psyr_4019 0.68 -2.3
4,786,952 - Psyr_4019 0.68 +0.7
4,786,952 - Psyr_4019 0.68 -0.2
4,786,952 - Psyr_4019 0.68 -1.3
4,787,151 - -0.1
4,787,199 - +1.0
4,787,240 + -2.3
4,787,362 + Psyr_4020 0.15 +0.2
4,787,499 + Psyr_4020 0.25 -0.1
4,787,499 + Psyr_4020 0.25 -0.6
4,787,499 + Psyr_4020 0.25 -0.6
4,787,499 + Psyr_4020 0.25 +0.7
4,787,499 + Psyr_4020 0.25 -0.1
4,787,500 - Psyr_4020 0.25 -0.5
4,787,500 - Psyr_4020 0.25 -0.3
4,787,500 - Psyr_4020 0.25 -0.4
4,787,501 + Psyr_4020 0.25 +0.3
4,787,501 + Psyr_4020 0.25 -0.3
4,787,501 + Psyr_4020 0.25 -1.7
4,787,501 + Psyr_4020 0.25 -0.9
4,787,502 - Psyr_4020 0.25 -0.3
4,787,502 - Psyr_4020 0.25 -0.3
4,787,502 - Psyr_4020 0.25 +0.1
4,787,502 - Psyr_4020 0.25 +0.5
4,787,547 + Psyr_4020 0.28 +0.4
4,787,548 - Psyr_4020 0.28 +0.9
4,787,693 + Psyr_4020 0.38 +0.2
4,787,693 + Psyr_4020 0.38 +1.2
4,787,694 - Psyr_4020 0.38 +0.3
4,787,694 - Psyr_4020 0.38 +1.8
4,787,695 + Psyr_4020 0.38 +0.6
4,787,695 + Psyr_4020 0.38 -3.2
4,787,696 - Psyr_4020 0.38 -0.8
4,787,696 - Psyr_4020 0.38 +0.7
4,787,696 - Psyr_4020 0.38 -0.2
4,787,696 - Psyr_4020 0.38 +0.2
4,787,696 - Psyr_4020 0.38 -0.3
4,787,752 + Psyr_4020 0.42 -0.5
4,787,752 + Psyr_4020 0.42 -2.2
4,787,752 + Psyr_4020 0.42 -0.2
4,787,753 - Psyr_4020 0.42 -0.4
4,787,753 - Psyr_4020 0.42 -0.6
4,787,753 - Psyr_4020 0.42 -0.1
4,787,753 - Psyr_4020 0.42 -0.8
4,787,754 + Psyr_4020 0.42 +0.7
4,787,754 + Psyr_4020 0.42 -0.3
4,787,754 + Psyr_4020 0.42 -0.4
4,787,754 + Psyr_4020 0.42 -1.2
4,787,755 - Psyr_4020 0.42 -0.7
4,787,755 - Psyr_4020 0.42 +0.4
4,787,755 - Psyr_4020 0.42 -0.8
4,787,756 + Psyr_4020 0.43 -0.6
4,787,756 + Psyr_4020 0.43 -1.3
4,787,757 - Psyr_4020 0.43 -0.8
4,787,757 - Psyr_4020 0.43 +0.8
4,787,757 - Psyr_4020 0.43 -1.0
4,787,771 + Psyr_4020 0.44 -0.3
4,787,772 - Psyr_4020 0.44 -0.7
4,787,772 - Psyr_4020 0.44 +0.1
4,787,880 + Psyr_4020 0.51 -0.1
4,787,881 - Psyr_4020 0.51 +1.4
4,787,881 - Psyr_4020 0.51 +0.1
4,787,912 - Psyr_4020 0.53 +1.3
4,787,912 - Psyr_4020 0.53 +0.1
4,787,912 - Psyr_4020 0.53 -0.0
4,787,979 + Psyr_4020 0.58 +0.2
4,787,980 - Psyr_4020 0.58 +0.5
4,787,980 - Psyr_4020 0.58 -0.4
4,787,980 - Psyr_4020 0.58 -0.5
4,787,980 - Psyr_4020 0.58 -0.0
4,787,980 - Psyr_4020 0.58 +0.7
4,787,980 - Psyr_4020 0.58 -0.5
4,787,985 + Psyr_4020 0.59 +0.7
4,787,986 - Psyr_4020 0.59 +0.7
4,787,986 - Psyr_4020 0.59 +0.0

Or see this region's nucleotide sequence