Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3797

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3796 and Psyr_3797 are separated by 88 nucleotidesPsyr_3797 and Psyr_3798 are separated by 117 nucleotidesPsyr_3798 and Psyr_3799 are separated by 57 nucleotides Psyr_3796: Psyr_3796 - transcriptional regulator, LysR family, at 4,513,374 to 4,514,273 _3796 Psyr_3797: Psyr_3797 - NAD(P)H dehydrogenase (quinone), at 4,514,362 to 4,515,162 _3797 Psyr_3798: Psyr_3798 - conserved domain protein, at 4,515,280 to 4,515,795 _3798 Psyr_3799: Psyr_3799 - conserved hypothetical protein, at 4,515,853 to 4,516,881 _3799 Position (kb) 4514 4515 4516Strain fitness (log2 ratio) -2 -1 0 1at 4513.756 kb on + strand, within Psyr_3796at 4513.756 kb on + strand, within Psyr_3796at 4513.756 kb on + strand, within Psyr_3796at 4514.253 kb on - strandat 4514.253 kb on - strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.369 kb on + strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.370 kb on - strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.373 kb on + strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.374 kb on - strandat 4514.573 kb on + strand, within Psyr_3797at 4514.574 kb on - strand, within Psyr_3797at 4514.574 kb on - strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.645 kb on + strand, within Psyr_3797at 4514.646 kb on - strand, within Psyr_3797at 4514.646 kb on - strand, within Psyr_3797at 4514.646 kb on - strand, within Psyr_3797at 4514.699 kb on + strand, within Psyr_3797at 4514.700 kb on - strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.710 kb on + strand, within Psyr_3797at 4514.711 kb on - strand, within Psyr_3797at 4514.909 kb on - strand, within Psyr_3797at 4515.064 kb on + strand, within Psyr_3797at 4515.161 kb on - strandat 4515.207 kb on + strandat 4515.284 kb on + strandat 4515.285 kb on - strandat 4515.317 kb on + strandat 4515.318 kb on - strandat 4515.388 kb on + strand, within Psyr_3798at 4515.388 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.573 kb on - strand, within Psyr_3798at 4515.646 kb on + strand, within Psyr_3798at 4515.646 kb on + strand, within Psyr_3798at 4515.647 kb on - strand, within Psyr_3798at 4515.647 kb on - strand, within Psyr_3798at 4515.650 kb on - strand, within Psyr_3798at 4515.682 kb on - strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.695 kb on - strand, within Psyr_3798at 4515.736 kb on - strand, within Psyr_3798at 4515.765 kb on - strandat 4515.854 kb on + strandat 4515.855 kb on - strandat 4515.980 kb on + strand, within Psyr_3799at 4515.981 kb on - strand, within Psyr_3799

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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4,513,756 + Psyr_3796 0.42 -0.3
4,513,756 + Psyr_3796 0.42 +0.9
4,513,756 + Psyr_3796 0.42 +0.6
4,514,253 - +0.2
4,514,253 - +0.1
4,514,369 + -0.2
4,514,369 + +0.1
4,514,369 + -0.8
4,514,369 + -0.6
4,514,369 + +0.9
4,514,369 + +1.7
4,514,370 - +0.4
4,514,370 - +0.1
4,514,370 - -0.1
4,514,370 - +0.2
4,514,370 - -0.2
4,514,370 - +0.2
4,514,370 - -1.4
4,514,370 - -0.1
4,514,373 + -1.8
4,514,373 + -2.0
4,514,373 + -1.0
4,514,373 + -0.1
4,514,373 + -0.1
4,514,373 + -0.4
4,514,373 + -0.6
4,514,374 - +0.4
4,514,374 - +0.6
4,514,374 - +0.7
4,514,374 - +0.8
4,514,374 - -0.7
4,514,374 - -1.0
4,514,573 + Psyr_3797 0.26 +0.2
4,514,574 - Psyr_3797 0.26 -0.6
4,514,574 - Psyr_3797 0.26 -0.7
4,514,645 + Psyr_3797 0.35 -1.0
4,514,645 + Psyr_3797 0.35 +1.3
4,514,645 + Psyr_3797 0.35 +0.9
4,514,645 + Psyr_3797 0.35 +0.1
4,514,645 + Psyr_3797 0.35 -2.5
4,514,645 + Psyr_3797 0.35 +0.6
4,514,646 - Psyr_3797 0.35 -0.0
4,514,646 - Psyr_3797 0.35 +0.6
4,514,646 - Psyr_3797 0.35 -0.7
4,514,699 + Psyr_3797 0.42 +1.3
4,514,700 - Psyr_3797 0.42 -0.4
4,514,710 + Psyr_3797 0.43 -1.0
4,514,710 + Psyr_3797 0.43 +0.4
4,514,710 + Psyr_3797 0.43 +1.0
4,514,710 + Psyr_3797 0.43 +0.7
4,514,710 + Psyr_3797 0.43 +1.1
4,514,710 + Psyr_3797 0.43 -0.1
4,514,711 - Psyr_3797 0.44 +0.5
4,514,909 - Psyr_3797 0.68 +0.5
4,515,064 + Psyr_3797 0.88 -0.6
4,515,161 - -2.4
4,515,207 + +0.1
4,515,284 + -0.4
4,515,285 - -0.0
4,515,317 + -0.7
4,515,318 - +0.4
4,515,388 + Psyr_3798 0.21 +0.2
4,515,388 + Psyr_3798 0.21 +0.2
4,515,457 + Psyr_3798 0.34 +0.5
4,515,457 + Psyr_3798 0.34 -0.4
4,515,457 + Psyr_3798 0.34 +0.4
4,515,457 + Psyr_3798 0.34 +0.8
4,515,457 + Psyr_3798 0.34 +0.1
4,515,457 + Psyr_3798 0.34 +1.6
4,515,458 - Psyr_3798 0.34 +0.2
4,515,458 - Psyr_3798 0.34 +0.4
4,515,458 - Psyr_3798 0.34 +1.0
4,515,458 - Psyr_3798 0.34 -1.1
4,515,458 - Psyr_3798 0.34 -0.4
4,515,458 - Psyr_3798 0.34 +1.0
4,515,458 - Psyr_3798 0.34 -0.3
4,515,458 - Psyr_3798 0.34 +0.1
4,515,458 - Psyr_3798 0.34 +1.1
4,515,458 - Psyr_3798 0.34 +0.2
4,515,458 - Psyr_3798 0.34 +0.3
4,515,458 - Psyr_3798 0.34 -0.4
4,515,458 - Psyr_3798 0.34 +1.1
4,515,458 - Psyr_3798 0.34 -1.0
4,515,458 - Psyr_3798 0.34 +1.0
4,515,573 - Psyr_3798 0.57 +1.6
4,515,646 + Psyr_3798 0.71 +0.4
4,515,646 + Psyr_3798 0.71 +0.1
4,515,647 - Psyr_3798 0.71 +0.8
4,515,647 - Psyr_3798 0.71 +1.6
4,515,650 - Psyr_3798 0.72 -0.7
4,515,682 - Psyr_3798 0.78 -0.8
4,515,694 + Psyr_3798 0.80 -0.3
4,515,694 + Psyr_3798 0.80 +0.3
4,515,694 + Psyr_3798 0.80 -0.6
4,515,694 + Psyr_3798 0.80 +0.6
4,515,695 - Psyr_3798 0.80 +0.2
4,515,736 - Psyr_3798 0.88 -0.2
4,515,765 - -1.2
4,515,854 + -0.6
4,515,855 - +0.2
4,515,980 + Psyr_3799 0.12 +0.0
4,515,981 - Psyr_3799 0.12 +0.3

Or see this region's nucleotide sequence