Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3598

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3596 and Psyr_3597 are separated by 52 nucleotidesPsyr_3597 and Psyr_3598 are separated by 4 nucleotidesPsyr_3598 and Psyr_3599 are separated by 257 nucleotides Psyr_3596: Psyr_3596 - Selenoprotein W-related protein, at 4,277,893 to 4,278,195 _3596 Psyr_3597: Psyr_3597 - ABC transporter, at 4,278,248 to 4,279,072 _3597 Psyr_3598: Psyr_3598 - Binding-protein-dependent transport systems inner membrane component, at 4,279,077 to 4,279,934 _3598 Psyr_3599: Psyr_3599 - Alkanesulfonate monooxygenase, at 4,280,192 to 4,281,280 _3599 Position (kb) 4279 4280Strain fitness (log2 ratio) -2 -1 0 1 2at 4278.161 kb on + strand, within Psyr_3596at 4278.161 kb on + strand, within Psyr_3596at 4278.161 kb on + strand, within Psyr_3596at 4278.161 kb on + strand, within Psyr_3596at 4278.162 kb on - strand, within Psyr_3596at 4278.230 kb on + strandat 4278.231 kb on - strandat 4278.752 kb on - strand, within Psyr_3597at 4279.010 kb on + strandat 4279.011 kb on - strandat 4279.011 kb on - strandat 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.165 kb on + strand, within Psyr_3598at 4279.166 kb on - strand, within Psyr_3598at 4279.181 kb on + strand, within Psyr_3598at 4279.287 kb on - strand, within Psyr_3598at 4279.298 kb on - strand, within Psyr_3598at 4279.938 kb on + strandat 4279.938 kb on + strandat 4279.938 kb on + strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.939 kb on - strandat 4279.982 kb on - strandat 4280.100 kb on - strandat 4280.213 kb on + strandat 4280.213 kb on + strandat 4280.213 kb on + strandat 4280.213 kb on + strandat 4280.214 kb on - strandat 4280.440 kb on + strand, within Psyr_3599at 4280.446 kb on - strand, within Psyr_3599at 4280.503 kb on + strand, within Psyr_3599at 4280.504 kb on - strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.648 kb on + strand, within Psyr_3599at 4280.649 kb on - strand, within Psyr_3599at 4280.649 kb on - strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.651 kb on + strand, within Psyr_3599at 4280.701 kb on + strand, within Psyr_3599at 4280.701 kb on + strand, within Psyr_3599at 4280.701 kb on + strand, within Psyr_3599at 4280.711 kb on + strand, within Psyr_3599at 4280.711 kb on + strand, within Psyr_3599at 4280.712 kb on - strand, within Psyr_3599at 4280.768 kb on + strand, within Psyr_3599at 4280.768 kb on + strand, within Psyr_3599at 4280.769 kb on - strand, within Psyr_3599at 4280.769 kb on - strand, within Psyr_3599at 4280.769 kb on - strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.789 kb on + strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.790 kb on - strand, within Psyr_3599at 4280.923 kb on + strand, within Psyr_3599at 4280.924 kb on - strandat 4280.924 kb on - strand, within Psyr_3599

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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4,278,161 + Psyr_3596 0.88 +1.3
4,278,161 + Psyr_3596 0.88 -0.6
4,278,161 + Psyr_3596 0.88 -0.3
4,278,161 + Psyr_3596 0.88 -1.1
4,278,162 - Psyr_3596 0.89 +1.6
4,278,230 + +0.8
4,278,231 - -0.6
4,278,752 - Psyr_3597 0.61 -0.5
4,279,010 + -0.5
4,279,011 - -0.3
4,279,011 - -0.3
4,279,165 + Psyr_3598 0.10 -0.0
4,279,165 + Psyr_3598 0.10 -0.4
4,279,165 + Psyr_3598 0.10 +0.1
4,279,165 + Psyr_3598 0.10 -1.4
4,279,165 + Psyr_3598 0.10 +0.0
4,279,165 + Psyr_3598 0.10 -1.6
4,279,165 + Psyr_3598 0.10 -1.4
4,279,166 - Psyr_3598 0.10 -0.0
4,279,181 + Psyr_3598 0.12 -1.0
4,279,287 - Psyr_3598 0.24 -0.6
4,279,298 - Psyr_3598 0.26 -2.4
4,279,938 + -1.0
4,279,938 + +0.9
4,279,938 + +0.8
4,279,939 - -1.3
4,279,939 - -0.9
4,279,939 - -0.2
4,279,939 - +0.3
4,279,939 - +0.1
4,279,939 - +0.4
4,279,982 - +1.2
4,280,100 - -1.4
4,280,213 + +0.1
4,280,213 + -0.9
4,280,213 + +0.7
4,280,213 + +0.1
4,280,214 - -0.4
4,280,440 + Psyr_3599 0.23 +0.3
4,280,446 - Psyr_3599 0.23 +0.2
4,280,503 + Psyr_3599 0.29 -0.8
4,280,504 - Psyr_3599 0.29 -0.4
4,280,648 + Psyr_3599 0.42 +2.0
4,280,648 + Psyr_3599 0.42 -0.7
4,280,648 + Psyr_3599 0.42 -0.0
4,280,648 + Psyr_3599 0.42 -0.0
4,280,648 + Psyr_3599 0.42 -0.6
4,280,649 - Psyr_3599 0.42 +0.4
4,280,649 - Psyr_3599 0.42 -2.4
4,280,651 + Psyr_3599 0.42 +1.0
4,280,651 + Psyr_3599 0.42 +0.2
4,280,651 + Psyr_3599 0.42 +1.0
4,280,651 + Psyr_3599 0.42 +0.8
4,280,701 + Psyr_3599 0.47 -0.1
4,280,701 + Psyr_3599 0.47 +0.2
4,280,701 + Psyr_3599 0.47 -1.9
4,280,711 + Psyr_3599 0.48 +0.4
4,280,711 + Psyr_3599 0.48 +0.6
4,280,712 - Psyr_3599 0.48 +0.4
4,280,768 + Psyr_3599 0.53 +0.3
4,280,768 + Psyr_3599 0.53 +1.1
4,280,769 - Psyr_3599 0.53 -0.7
4,280,769 - Psyr_3599 0.53 -1.4
4,280,769 - Psyr_3599 0.53 +1.4
4,280,789 + Psyr_3599 0.55 -1.0
4,280,789 + Psyr_3599 0.55 -0.3
4,280,789 + Psyr_3599 0.55 -0.4
4,280,789 + Psyr_3599 0.55 +1.4
4,280,789 + Psyr_3599 0.55 -1.6
4,280,789 + Psyr_3599 0.55 -1.3
4,280,790 - Psyr_3599 0.55 +0.7
4,280,790 - Psyr_3599 0.55 -0.8
4,280,790 - Psyr_3599 0.55 -1.0
4,280,790 - Psyr_3599 0.55 -0.8
4,280,923 + Psyr_3599 0.67 -0.1
4,280,924 - -0.0
4,280,924 - Psyr_3599 0.67 -0.4

Or see this region's nucleotide sequence