Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3465

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3464 and Psyr_3465 are separated by 83 nucleotidesPsyr_3465 and Psyr_3466 are separated by 72 nucleotides Psyr_3464: Psyr_3464 - Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN, at 4,127,689 to 4,129,140 _3464 Psyr_3465: Psyr_3465 - Flagellar protein FlaG protein, at 4,129,224 to 4,129,616 _3465 Psyr_3466: Psyr_3466 - Flagellin, C-terminal:Flagellin, N-terminal, at 4,129,689 to 4,130,537 _3466 Position (kb) 4129 4130Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4128.269 kb on + strand, within Psyr_3464at 4128.269 kb on + strand, within Psyr_3464at 4128.269 kb on + strand, within Psyr_3464at 4128.269 kb on + strand, within Psyr_3464at 4128.269 kb on + strand, within Psyr_3464at 4128.270 kb on - strand, within Psyr_3464at 4128.270 kb on - strand, within Psyr_3464at 4128.528 kb on + strand, within Psyr_3464at 4128.529 kb on - strand, within Psyr_3464at 4128.529 kb on - strand, within Psyr_3464at 4128.529 kb on - strand, within Psyr_3464at 4128.719 kb on + strand, within Psyr_3464at 4128.719 kb on + strand, within Psyr_3464at 4128.719 kb on + strand, within Psyr_3464at 4128.719 kb on + strand, within Psyr_3464at 4128.720 kb on - strand, within Psyr_3464at 4128.720 kb on - strand, within Psyr_3464at 4128.763 kb on - strand, within Psyr_3464at 4128.763 kb on - strand, within Psyr_3464at 4128.763 kb on - strand, within Psyr_3464at 4128.763 kb on - strand, within Psyr_3464at 4128.891 kb on + strand, within Psyr_3464at 4128.891 kb on + strand, within Psyr_3464at 4128.891 kb on + strand, within Psyr_3464at 4128.892 kb on - strand, within Psyr_3464at 4128.892 kb on - strand, within Psyr_3464at 4128.892 kb on - strand, within Psyr_3464at 4128.892 kb on - strand, within Psyr_3464at 4128.892 kb on - strand, within Psyr_3464at 4128.900 kb on + strand, within Psyr_3464at 4128.900 kb on + strand, within Psyr_3464at 4128.901 kb on - strand, within Psyr_3464at 4128.901 kb on - strand, within Psyr_3464at 4129.111 kb on - strandat 4129.119 kb on + strandat 4129.119 kb on + strandat 4129.119 kb on + strandat 4129.119 kb on + strandat 4129.119 kb on + strandat 4129.119 kb on + strandat 4129.120 kb on - strandat 4129.120 kb on - strandat 4129.120 kb on - strandat 4129.120 kb on - strandat 4129.120 kb on - strandat 4129.120 kb on - strandat 4129.125 kb on + strandat 4129.125 kb on + strandat 4129.125 kb on + strandat 4129.126 kb on - strandat 4129.126 kb on - strandat 4129.126 kb on - strandat 4129.126 kb on - strandat 4129.126 kb on - strandat 4129.308 kb on + strand, within Psyr_3465at 4129.308 kb on + strand, within Psyr_3465at 4129.308 kb on + strand, within Psyr_3465at 4129.308 kb on + strand, within Psyr_3465at 4129.309 kb on - strand, within Psyr_3465at 4129.311 kb on + strand, within Psyr_3465at 4129.311 kb on + strand, within Psyr_3465at 4129.311 kb on + strand, within Psyr_3465at 4129.311 kb on + strand, within Psyr_3465at 4129.312 kb on - strand, within Psyr_3465at 4129.312 kb on - strand, within Psyr_3465at 4129.312 kb on - strand, within Psyr_3465at 4129.312 kb on - strand, within Psyr_3465at 4129.439 kb on + strand, within Psyr_3465at 4129.439 kb on + strand, within Psyr_3465at 4129.482 kb on - strand, within Psyr_3465at 4129.482 kb on - strand, within Psyr_3465at 4129.482 kb on - strand, within Psyr_3465at 4129.482 kb on - strand, within Psyr_3465at 4129.611 kb on - strandat 4129.657 kb on + strandat 4129.657 kb on + strandat 4129.658 kb on - strandat 4129.658 kb on - strandat 4129.658 kb on - strandat 4129.690 kb on + strandat 4129.691 kb on - strandat 4130.150 kb on + strand, within Psyr_3466at 4130.151 kb on - strand, within Psyr_3466at 4130.264 kb on + strandat 4130.264 kb on + strandat 4130.324 kb on + strandat 4130.325 kb on - strand, within Psyr_3466at 4130.326 kb on - strand, within Psyr_3466at 4130.384 kb on + strand, within Psyr_3466at 4130.511 kb on + strandat 4130.511 kb on + strandat 4130.511 kb on + strandat 4130.511 kb on + strandat 4130.524 kb on - strandat 4130.562 kb on - strandat 4130.564 kb on + strandat 4130.564 kb on + strandat 4130.564 kb on + strandat 4130.564 kb on + strandat 4130.565 kb on - strandat 4130.565 kb on - strandat 4130.565 kb on - strandat 4130.565 kb on - strandat 4130.602 kb on - strandat 4130.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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4,128,269 + Psyr_3464 0.40 -0.6
4,128,269 + Psyr_3464 0.40 +2.3
4,128,269 + Psyr_3464 0.40 +1.1
4,128,269 + Psyr_3464 0.40 +0.1
4,128,269 + Psyr_3464 0.40 +0.3
4,128,270 - Psyr_3464 0.40 +1.3
4,128,270 - Psyr_3464 0.40 +0.3
4,128,528 + Psyr_3464 0.58 -1.1
4,128,529 - Psyr_3464 0.58 -0.5
4,128,529 - Psyr_3464 0.58 -0.6
4,128,529 - Psyr_3464 0.58 -1.5
4,128,719 + Psyr_3464 0.71 +0.2
4,128,719 + Psyr_3464 0.71 +1.5
4,128,719 + Psyr_3464 0.71 -1.4
4,128,719 + Psyr_3464 0.71 +1.1
4,128,720 - Psyr_3464 0.71 -0.5
4,128,720 - Psyr_3464 0.71 -0.6
4,128,763 - Psyr_3464 0.74 +0.8
4,128,763 - Psyr_3464 0.74 -0.6
4,128,763 - Psyr_3464 0.74 +3.2
4,128,763 - Psyr_3464 0.74 +0.4
4,128,891 + Psyr_3464 0.83 -1.2
4,128,891 + Psyr_3464 0.83 -1.3
4,128,891 + Psyr_3464 0.83 -1.5
4,128,892 - Psyr_3464 0.83 -0.2
4,128,892 - Psyr_3464 0.83 +0.1
4,128,892 - Psyr_3464 0.83 +0.3
4,128,892 - Psyr_3464 0.83 -0.8
4,128,892 - Psyr_3464 0.83 +0.7
4,128,900 + Psyr_3464 0.83 -0.6
4,128,900 + Psyr_3464 0.83 -0.5
4,128,901 - Psyr_3464 0.83 -0.1
4,128,901 - Psyr_3464 0.83 -1.4
4,129,111 - -0.6
4,129,119 + -0.1
4,129,119 + +0.3
4,129,119 + +0.3
4,129,119 + -1.2
4,129,119 + -0.7
4,129,119 + -1.1
4,129,120 - +0.5
4,129,120 - +1.9
4,129,120 - +0.2
4,129,120 - -0.7
4,129,120 - -0.2
4,129,120 - +1.1
4,129,125 + -0.8
4,129,125 + -1.4
4,129,125 + -1.3
4,129,126 - +1.0
4,129,126 - -2.1
4,129,126 - -0.3
4,129,126 - +0.3
4,129,126 - -0.3
4,129,308 + Psyr_3465 0.21 -1.1
4,129,308 + Psyr_3465 0.21 -0.5
4,129,308 + Psyr_3465 0.21 -1.5
4,129,308 + Psyr_3465 0.21 -1.9
4,129,309 - Psyr_3465 0.22 +0.3
4,129,311 + Psyr_3465 0.22 +0.0
4,129,311 + Psyr_3465 0.22 -0.0
4,129,311 + Psyr_3465 0.22 -0.2
4,129,311 + Psyr_3465 0.22 +0.9
4,129,312 - Psyr_3465 0.22 -0.8
4,129,312 - Psyr_3465 0.22 +2.1
4,129,312 - Psyr_3465 0.22 -0.7
4,129,312 - Psyr_3465 0.22 +0.9
4,129,439 + Psyr_3465 0.55 -0.1
4,129,439 + Psyr_3465 0.55 -0.1
4,129,482 - Psyr_3465 0.66 -0.3
4,129,482 - Psyr_3465 0.66 -0.2
4,129,482 - Psyr_3465 0.66 -0.4
4,129,482 - Psyr_3465 0.66 -0.6
4,129,611 - -1.1
4,129,657 + +0.5
4,129,657 + +0.8
4,129,658 - +0.5
4,129,658 - +1.9
4,129,658 - +0.0
4,129,690 + -1.1
4,129,691 - -0.6
4,130,150 + Psyr_3466 0.54 +0.2
4,130,151 - Psyr_3466 0.54 -0.6
4,130,264 + +2.7
4,130,264 + +2.1
4,130,324 + -1.5
4,130,325 - Psyr_3466 0.75 +0.5
4,130,326 - Psyr_3466 0.75 -0.1
4,130,384 + Psyr_3466 0.82 +2.5
4,130,511 + +1.0
4,130,511 + -0.3
4,130,511 + +0.1
4,130,511 + -1.2
4,130,524 - -0.5
4,130,562 - -1.3
4,130,564 + +0.5
4,130,564 + -1.3
4,130,564 + +0.3
4,130,564 + -0.9
4,130,565 - +0.8
4,130,565 - -0.3
4,130,565 - +2.0
4,130,565 - -0.3
4,130,602 - -0.5
4,130,615 - +0.3

Or see this region's nucleotide sequence