Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3239

Experiment: KB with Phloretin 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3237 and Psyr_3238 are separated by 42 nucleotidesPsyr_3238 and Psyr_3239 are separated by 234 nucleotidesPsyr_3239 and Psyr_3240 are separated by 327 nucleotides Psyr_3237: Psyr_3237 - 3-oxoacid CoA-transferase, at 3,875,627 to 3,876,328 _3237 Psyr_3238: Psyr_3238 - 3-oxoacid CoA-transferase, at 3,876,371 to 3,877,027 _3238 Psyr_3239: Psyr_3239 - Short chain fatty acid transporter, at 3,877,262 to 3,878,680 _3239 Psyr_3240: Psyr_3240 - CTP synthase, at 3,879,008 to 3,879,730 _3240 Position (kb) 3877 3878 3879Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3876.276 kb on + strandat 3876.277 kb on - strandat 3876.346 kb on + strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.432 kb on - strandat 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.473 kb on + strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.474 kb on - strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.477 kb on + strand, within Psyr_3238at 3876.478 kb on - strand, within Psyr_3238at 3876.673 kb on - strand, within Psyr_3238at 3877.208 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.239 kb on - strandat 3877.242 kb on + strandat 3877.242 kb on + strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.275 kb on + strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.276 kb on - strandat 3877.350 kb on + strandat 3877.496 kb on + strand, within Psyr_3239at 3877.715 kb on + strand, within Psyr_3239at 3877.715 kb on + strand, within Psyr_3239at 3878.119 kb on + strand, within Psyr_3239at 3878.119 kb on + strand, within Psyr_3239at 3878.119 kb on + strand, within Psyr_3239at 3878.119 kb on + strand, within Psyr_3239at 3878.120 kb on - strand, within Psyr_3239at 3878.124 kb on - strand, within Psyr_3239at 3878.303 kb on + strand, within Psyr_3239at 3878.303 kb on + strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.304 kb on - strand, within Psyr_3239at 3878.341 kb on + strand, within Psyr_3239at 3878.342 kb on - strand, within Psyr_3239at 3878.342 kb on - strand, within Psyr_3239at 3878.342 kb on - strand, within Psyr_3239at 3878.366 kb on + strand, within Psyr_3239at 3878.366 kb on + strand, within Psyr_3239at 3878.367 kb on - strand, within Psyr_3239at 3878.367 kb on - strand, within Psyr_3239at 3878.460 kb on - strand, within Psyr_3239at 3878.478 kb on + strand, within Psyr_3239at 3878.486 kb on + strand, within Psyr_3239at 3878.486 kb on + strand, within Psyr_3239at 3878.486 kb on + strand, within Psyr_3239at 3878.487 kb on - strand, within Psyr_3239at 3878.487 kb on - strand, within Psyr_3239at 3878.487 kb on - strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.528 kb on + strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.529 kb on - strand, within Psyr_3239at 3878.550 kb on + strandat 3878.657 kb on + strandat 3878.657 kb on + strandat 3878.657 kb on + strandat 3878.658 kb on - strandat 3878.658 kb on - strandat 3878.658 kb on - strandat 3878.658 kb on - strandat 3878.701 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.983 kb on + strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3878.984 kb on - strandat 3879.014 kb on + strandat 3879.015 kb on - strandat 3879.108 kb on + strand, within Psyr_3240at 3879.108 kb on + strand, within Psyr_3240at 3879.109 kb on - strand, within Psyr_3240at 3879.408 kb on + strand, within Psyr_3240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
remove
3,876,276 + +0.2
3,876,277 - -1.6
3,876,346 + -1.4
3,876,432 - -0.2
3,876,432 - -0.6
3,876,432 - -2.6
3,876,432 - -1.2
3,876,473 + Psyr_3238 0.16 +0.4
3,876,473 + Psyr_3238 0.16 +0.4
3,876,473 + Psyr_3238 0.16 -0.4
3,876,473 + Psyr_3238 0.16 +1.6
3,876,473 + Psyr_3238 0.16 +1.1
3,876,473 + Psyr_3238 0.16 +0.2
3,876,473 + Psyr_3238 0.16 +1.2
3,876,473 + Psyr_3238 0.16 -0.6
3,876,473 + Psyr_3238 0.16 +0.7
3,876,473 + Psyr_3238 0.16 +0.9
3,876,473 + Psyr_3238 0.16 +0.8
3,876,473 + Psyr_3238 0.16 +0.4
3,876,473 + Psyr_3238 0.16 -1.2
3,876,473 + Psyr_3238 0.16 +0.2
3,876,473 + Psyr_3238 0.16 +0.4
3,876,474 - Psyr_3238 0.16 -0.9
3,876,474 - Psyr_3238 0.16 -2.2
3,876,474 - Psyr_3238 0.16 +0.6
3,876,474 - Psyr_3238 0.16 -1.9
3,876,474 - Psyr_3238 0.16 -1.6
3,876,474 - Psyr_3238 0.16 -0.0
3,876,474 - Psyr_3238 0.16 -1.7
3,876,474 - Psyr_3238 0.16 +1.2
3,876,474 - Psyr_3238 0.16 -0.2
3,876,474 - Psyr_3238 0.16 +1.4
3,876,474 - Psyr_3238 0.16 -0.1
3,876,474 - Psyr_3238 0.16 -0.3
3,876,474 - Psyr_3238 0.16 +0.1
3,876,474 - Psyr_3238 0.16 +0.8
3,876,474 - Psyr_3238 0.16 -0.3
3,876,474 - Psyr_3238 0.16 +0.6
3,876,474 - Psyr_3238 0.16 +0.1
3,876,477 + Psyr_3238 0.16 +2.0
3,876,477 + Psyr_3238 0.16 -2.4
3,876,478 - Psyr_3238 0.16 +1.7
3,876,673 - Psyr_3238 0.46 +0.6
3,877,208 + +0.8
3,877,238 + -0.2
3,877,238 + -0.6
3,877,239 - +0.3
3,877,242 + -0.3
3,877,242 + +1.3
3,877,275 + +0.8
3,877,275 + +0.1
3,877,275 + -0.0
3,877,275 + -0.1
3,877,276 - +1.9
3,877,276 - +0.8
3,877,276 - -1.9
3,877,276 - -0.2
3,877,276 - -0.4
3,877,276 - -0.2
3,877,350 + -0.6
3,877,496 + Psyr_3239 0.16 +0.4
3,877,715 + Psyr_3239 0.32 +0.9
3,877,715 + Psyr_3239 0.32 +0.4
3,878,119 + Psyr_3239 0.60 +1.2
3,878,119 + Psyr_3239 0.60 -0.5
3,878,119 + Psyr_3239 0.60 -0.6
3,878,119 + Psyr_3239 0.60 +1.4
3,878,120 - Psyr_3239 0.60 +1.0
3,878,124 - Psyr_3239 0.61 -0.6
3,878,303 + Psyr_3239 0.73 +0.9
3,878,303 + Psyr_3239 0.73 +0.3
3,878,304 - Psyr_3239 0.73 +0.3
3,878,304 - Psyr_3239 0.73 +0.9
3,878,304 - Psyr_3239 0.73 +0.3
3,878,304 - Psyr_3239 0.73 +2.0
3,878,304 - Psyr_3239 0.73 +1.9
3,878,341 + Psyr_3239 0.76 +0.1
3,878,342 - Psyr_3239 0.76 +0.1
3,878,342 - Psyr_3239 0.76 +1.2
3,878,342 - Psyr_3239 0.76 -0.0
3,878,366 + Psyr_3239 0.78 +0.9
3,878,366 + Psyr_3239 0.78 +1.2
3,878,367 - Psyr_3239 0.78 +0.4
3,878,367 - Psyr_3239 0.78 -1.0
3,878,460 - Psyr_3239 0.84 +1.1
3,878,478 + Psyr_3239 0.86 +0.7
3,878,486 + Psyr_3239 0.86 +0.7
3,878,486 + Psyr_3239 0.86 -1.9
3,878,486 + Psyr_3239 0.86 -0.3
3,878,487 - Psyr_3239 0.86 -1.2
3,878,487 - Psyr_3239 0.86 -0.7
3,878,487 - Psyr_3239 0.86 +1.0
3,878,528 + Psyr_3239 0.89 -0.3
3,878,528 + Psyr_3239 0.89 -0.8
3,878,528 + Psyr_3239 0.89 -0.8
3,878,528 + Psyr_3239 0.89 -1.0
3,878,529 - Psyr_3239 0.89 +0.4
3,878,529 - Psyr_3239 0.89 +1.0
3,878,529 - Psyr_3239 0.89 +0.2
3,878,529 - Psyr_3239 0.89 +0.1
3,878,550 + -0.3
3,878,657 + -0.3
3,878,657 + -0.1
3,878,657 + +0.4
3,878,658 - +0.0
3,878,658 - +0.1
3,878,658 - -0.4
3,878,658 - +0.4
3,878,701 + +0.1
3,878,983 + -1.3
3,878,983 + -0.2
3,878,983 + -1.2
3,878,983 + +0.0
3,878,983 + -2.8
3,878,984 - +1.4
3,878,984 - +0.0
3,878,984 - +1.4
3,878,984 - +0.7
3,879,014 + +0.3
3,879,015 - +0.9
3,879,108 + Psyr_3240 0.14 +1.3
3,879,108 + Psyr_3240 0.14 +0.9
3,879,109 - Psyr_3240 0.14 -1.2
3,879,408 + Psyr_3240 0.55 -0.7

Or see this region's nucleotide sequence