Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2890

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2888 and Psyr_2889 are separated by 22 nucleotidesPsyr_2889 and Psyr_2890 are separated by 28 nucleotidesPsyr_2890 and Psyr_2891 overlap by 8 nucleotides Psyr_2888: Psyr_2888 - Amine oxidase, at 3,464,642 to 3,466,225 _2888 Psyr_2889: Psyr_2889 - amino acid ABC transporter substrate-binding protein, PAAT family, at 3,466,248 to 3,467,177 _2889 Psyr_2890: Psyr_2890 - amino acid ABC transporter ATP-binding protein, PAAT family, at 3,467,206 to 3,467,991 _2890 Psyr_2891: Psyr_2891 - amino acid ABC transporter membrane protein, PAAT family, at 3,467,984 to 3,468,973 _2891 Position (kb) 3467 3468Strain fitness (log2 ratio) -2 -1 0 1 2at 3466.484 kb on - strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.489 kb on + strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.490 kb on - strand, within Psyr_2889at 3466.492 kb on - strand, within Psyr_2889at 3466.492 kb on - strand, within Psyr_2889at 3466.492 kb on - strand, within Psyr_2889at 3466.568 kb on - strandat 3466.693 kb on - strand, within Psyr_2889at 3466.723 kb on + strand, within Psyr_2889at 3466.723 kb on + strand, within Psyr_2889at 3466.724 kb on - strand, within Psyr_2889at 3466.724 kb on - strand, within Psyr_2889at 3466.748 kb on - strand, within Psyr_2889at 3467.117 kb on + strandat 3467.117 kb on + strandat 3467.117 kb on + strandat 3467.118 kb on - strandat 3467.118 kb on - strandat 3467.209 kb on + strandat 3467.209 kb on + strandat 3467.210 kb on - strandat 3467.735 kb on + strand, within Psyr_2890at 3467.736 kb on - strand, within Psyr_2890at 3467.769 kb on - strand, within Psyr_2890at 3467.769 kb on - strand, within Psyr_2890at 3467.769 kb on - strand, within Psyr_2890at 3467.864 kb on - strand, within Psyr_2890at 3468.059 kb on + strandat 3468.096 kb on + strand, within Psyr_2891at 3468.096 kb on + strand, within Psyr_2891at 3468.096 kb on + strand, within Psyr_2891at 3468.096 kb on + strand, within Psyr_2891at 3468.097 kb on - strand, within Psyr_2891at 3468.097 kb on - strand, within Psyr_2891at 3468.097 kb on - strand, within Psyr_2891at 3468.121 kb on + strand, within Psyr_2891at 3468.186 kb on + strand, within Psyr_2891at 3468.186 kb on + strand, within Psyr_2891at 3468.186 kb on + strand, within Psyr_2891at 3468.186 kb on + strand, within Psyr_2891at 3468.186 kb on + strand, within Psyr_2891at 3468.186 kb on + strand, within Psyr_2891at 3468.187 kb on - strand, within Psyr_2891at 3468.187 kb on - strand, within Psyr_2891at 3468.187 kb on - strand, within Psyr_2891at 3468.204 kb on + strand, within Psyr_2891at 3468.204 kb on + strand, within Psyr_2891at 3468.204 kb on + strand, within Psyr_2891at 3468.231 kb on + strand, within Psyr_2891at 3468.231 kb on + strand, within Psyr_2891at 3468.232 kb on - strand, within Psyr_2891at 3468.417 kb on + strand, within Psyr_2891at 3468.417 kb on + strand, within Psyr_2891at 3468.418 kb on - strand, within Psyr_2891at 3468.418 kb on - strand, within Psyr_2891at 3468.418 kb on - strand, within Psyr_2891at 3468.447 kb on - strand, within Psyr_2891at 3468.538 kb on - strand, within Psyr_2891at 3468.538 kb on - strand, within Psyr_2891at 3468.555 kb on + strand, within Psyr_2891at 3468.556 kb on - strand, within Psyr_2891at 3468.606 kb on + strand, within Psyr_2891

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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3,466,484 - Psyr_2889 0.25 -0.3
3,466,489 + Psyr_2889 0.26 -2.2
3,466,489 + Psyr_2889 0.26 +0.4
3,466,489 + Psyr_2889 0.26 -0.3
3,466,489 + Psyr_2889 0.26 -0.8
3,466,489 + Psyr_2889 0.26 +0.2
3,466,489 + Psyr_2889 0.26 -0.2
3,466,489 + Psyr_2889 0.26 -0.1
3,466,489 + Psyr_2889 0.26 +2.4
3,466,489 + Psyr_2889 0.26 +0.3
3,466,489 + Psyr_2889 0.26 -0.6
3,466,489 + Psyr_2889 0.26 -1.1
3,466,490 - Psyr_2889 0.26 +1.4
3,466,490 - Psyr_2889 0.26 +1.4
3,466,490 - Psyr_2889 0.26 +0.1
3,466,490 - Psyr_2889 0.26 +0.0
3,466,490 - Psyr_2889 0.26 -0.2
3,466,490 - Psyr_2889 0.26 +0.9
3,466,490 - Psyr_2889 0.26 +0.8
3,466,490 - Psyr_2889 0.26 -0.6
3,466,490 - Psyr_2889 0.26 -1.7
3,466,490 - Psyr_2889 0.26 +0.0
3,466,490 - Psyr_2889 0.26 -1.2
3,466,490 - Psyr_2889 0.26 +0.4
3,466,490 - Psyr_2889 0.26 +0.8
3,466,490 - Psyr_2889 0.26 +2.2
3,466,490 - Psyr_2889 0.26 +1.0
3,466,492 - Psyr_2889 0.26 -0.8
3,466,492 - Psyr_2889 0.26 +0.5
3,466,492 - Psyr_2889 0.26 +1.1
3,466,568 - -0.2
3,466,693 - Psyr_2889 0.48 +0.3
3,466,723 + Psyr_2889 0.51 +1.6
3,466,723 + Psyr_2889 0.51 +0.4
3,466,724 - Psyr_2889 0.51 +0.9
3,466,724 - Psyr_2889 0.51 -0.3
3,466,748 - Psyr_2889 0.54 +0.0
3,467,117 + +1.6
3,467,117 + +1.0
3,467,117 + +1.0
3,467,118 - +0.6
3,467,118 - -0.7
3,467,209 + +2.4
3,467,209 + +0.7
3,467,210 - +0.5
3,467,735 + Psyr_2890 0.67 -0.2
3,467,736 - Psyr_2890 0.67 +0.8
3,467,769 - Psyr_2890 0.72 -0.0
3,467,769 - Psyr_2890 0.72 +1.8
3,467,769 - Psyr_2890 0.72 +1.0
3,467,864 - Psyr_2890 0.84 +2.3
3,468,059 + +0.1
3,468,096 + Psyr_2891 0.11 -0.2
3,468,096 + Psyr_2891 0.11 +0.4
3,468,096 + Psyr_2891 0.11 -1.0
3,468,096 + Psyr_2891 0.11 -0.4
3,468,097 - Psyr_2891 0.11 +0.8
3,468,097 - Psyr_2891 0.11 +0.1
3,468,097 - Psyr_2891 0.11 -0.8
3,468,121 + Psyr_2891 0.14 +0.1
3,468,186 + Psyr_2891 0.20 -0.3
3,468,186 + Psyr_2891 0.20 -0.1
3,468,186 + Psyr_2891 0.20 -0.2
3,468,186 + Psyr_2891 0.20 -0.2
3,468,186 + Psyr_2891 0.20 +0.2
3,468,186 + Psyr_2891 0.20 -0.4
3,468,187 - Psyr_2891 0.21 +0.8
3,468,187 - Psyr_2891 0.21 -0.9
3,468,187 - Psyr_2891 0.21 +1.4
3,468,204 + Psyr_2891 0.22 -1.6
3,468,204 + Psyr_2891 0.22 +0.9
3,468,204 + Psyr_2891 0.22 -0.6
3,468,231 + Psyr_2891 0.25 -0.2
3,468,231 + Psyr_2891 0.25 +0.2
3,468,232 - Psyr_2891 0.25 +0.4
3,468,417 + Psyr_2891 0.44 +1.4
3,468,417 + Psyr_2891 0.44 -0.4
3,468,418 - Psyr_2891 0.44 +0.2
3,468,418 - Psyr_2891 0.44 -1.6
3,468,418 - Psyr_2891 0.44 +2.7
3,468,447 - Psyr_2891 0.47 +1.1
3,468,538 - Psyr_2891 0.56 -0.2
3,468,538 - Psyr_2891 0.56 +0.8
3,468,555 + Psyr_2891 0.58 -0.6
3,468,556 - Psyr_2891 0.58 +0.3
3,468,606 + Psyr_2891 0.63 +1.6

Or see this region's nucleotide sequence