Experiment: KB with Phloretin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2837 and Psyr_2838 are separated by 173 nucleotides Psyr_2838 and Psyr_2839 are separated by 29 nucleotides Psyr_2839 and Psyr_2840 are separated by 104 nucleotides Psyr_2840 and Psyr_2841 are separated by 105 nucleotides
Psyr_2837: Psyr_2837 - hypothetical protein, at 3,410,765 to 3,411,730
_2837
Psyr_2838: Psyr_2838 - conserved hypothetical protein, at 3,411,904 to 3,412,251
_2838
Psyr_2839: Psyr_2839 - conserved hypothetical protein, at 3,412,281 to 3,413,093
_2839
Psyr_2840: Psyr_2840 - hypothetical protein, at 3,413,198 to 3,413,788
_2840
Psyr_2841: Psyr_2841 - hypothetical protein, at 3,413,894 to 3,414,502
_2841
Position (kb)
3412
3413
3414 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3411.287 kb on + strand, within Psyr_2837 at 3411.306 kb on - strand, within Psyr_2837 at 3411.307 kb on + strand, within Psyr_2837 at 3411.308 kb on - strand, within Psyr_2837 at 3411.326 kb on - strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.349 kb on + strand, within Psyr_2837 at 3411.350 kb on - strand, within Psyr_2837 at 3411.350 kb on - strand, within Psyr_2837 at 3411.350 kb on - strand, within Psyr_2837 at 3411.350 kb on - strand, within Psyr_2837 at 3411.350 kb on - strand, within Psyr_2837 at 3411.384 kb on + strand, within Psyr_2837 at 3411.384 kb on + strand, within Psyr_2837 at 3411.384 kb on + strand, within Psyr_2837 at 3411.385 kb on - strand, within Psyr_2837 at 3411.385 kb on - strand, within Psyr_2837 at 3411.385 kb on - strand, within Psyr_2837 at 3411.402 kb on - strand, within Psyr_2837 at 3411.437 kb on + strand, within Psyr_2837 at 3411.438 kb on - strand, within Psyr_2837 at 3411.438 kb on - strand, within Psyr_2837 at 3411.438 kb on - strand, within Psyr_2837 at 3411.438 kb on - strand, within Psyr_2837 at 3411.449 kb on + strand, within Psyr_2837 at 3411.450 kb on - strand, within Psyr_2837 at 3411.450 kb on - strand, within Psyr_2837 at 3411.494 kb on + strand, within Psyr_2837 at 3411.495 kb on - strand, within Psyr_2837 at 3411.512 kb on + strand, within Psyr_2837 at 3411.517 kb on + strand, within Psyr_2837 at 3411.521 kb on + strand, within Psyr_2837 at 3411.521 kb on + strand, within Psyr_2837 at 3411.521 kb on + strand, within Psyr_2837 at 3411.522 kb on - strand, within Psyr_2837 at 3411.590 kb on + strand, within Psyr_2837 at 3411.591 kb on - strand, within Psyr_2837 at 3411.616 kb on + strand, within Psyr_2837 at 3411.616 kb on + strand, within Psyr_2837 at 3411.616 kb on + strand, within Psyr_2837 at 3411.743 kb on + strand at 3411.743 kb on + strand at 3411.743 kb on + strand at 3411.744 kb on - strand at 3411.746 kb on + strand at 3411.768 kb on - strand at 3411.806 kb on - strand at 3411.825 kb on + strand at 3411.825 kb on + strand at 3411.864 kb on + strand at 3411.864 kb on + strand at 3411.864 kb on + strand at 3411.864 kb on + strand at 3411.865 kb on - strand at 3411.865 kb on - strand at 3411.865 kb on - strand at 3411.899 kb on + strand at 3411.899 kb on + strand at 3411.899 kb on + strand at 3411.899 kb on + strand at 3411.899 kb on + strand at 3411.900 kb on - strand at 3411.900 kb on - strand at 3412.099 kb on + strand, within Psyr_2838 at 3412.099 kb on + strand, within Psyr_2838 at 3412.100 kb on - strand, within Psyr_2838 at 3412.100 kb on - strand, within Psyr_2838 at 3412.100 kb on - strand, within Psyr_2838 at 3412.187 kb on + strand, within Psyr_2838 at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.280 kb on + strand at 3412.281 kb on - strand at 3412.281 kb on - strand at 3412.281 kb on - strand at 3412.281 kb on - strand at 3412.281 kb on - strand at 3412.281 kb on - strand at 3412.301 kb on + strand at 3412.302 kb on - strand at 3412.302 kb on - strand at 3412.302 kb on - strand at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.476 kb on + strand, within Psyr_2839 at 3412.477 kb on - strand at 3412.623 kb on + strand, within Psyr_2839 at 3412.670 kb on + strand, within Psyr_2839 at 3412.671 kb on - strand, within Psyr_2839 at 3413.099 kb on - strand at 3413.099 kb on - strand at 3413.231 kb on + strand at 3413.381 kb on - strand, within Psyr_2840 at 3413.389 kb on - strand, within Psyr_2840 at 3413.389 kb on - strand, within Psyr_2840 at 3413.527 kb on - strand, within Psyr_2840 at 3413.569 kb on + strand, within Psyr_2840 at 3413.570 kb on - strand, within Psyr_2840 at 3413.632 kb on + strand, within Psyr_2840 at 3413.633 kb on - strand, within Psyr_2840 at 3413.659 kb on + strand, within Psyr_2840 at 3413.660 kb on - strand, within Psyr_2840 at 3413.792 kb on + strand at 3413.792 kb on + strand at 3413.792 kb on + strand at 3413.793 kb on - strand at 3413.793 kb on - strand at 3413.793 kb on - strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.827 kb on + strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.828 kb on - strand at 3413.829 kb on + strand at 3413.829 kb on + strand at 3413.829 kb on + strand at 3413.830 kb on - strand at 3413.830 kb on - strand at 3413.830 kb on - strand at 3413.830 kb on - strand at 3413.830 kb on - strand at 3413.906 kb on + strand at 3413.906 kb on + strand at 3413.906 kb on + strand at 3413.907 kb on - strand at 3413.907 kb on - strand at 3413.927 kb on + strand at 3413.927 kb on + strand at 3413.927 kb on + strand at 3413.927 kb on + strand at 3413.927 kb on + strand at 3413.927 kb on + strand at 3413.927 kb on + strand at 3413.928 kb on - strand at 3413.928 kb on - strand at 3413.928 kb on - strand at 3413.971 kb on + strand, within Psyr_2841 at 3413.971 kb on + strand, within Psyr_2841 at 3413.971 kb on + strand, within Psyr_2841 at 3413.971 kb on + strand, within Psyr_2841 at 3413.971 kb on + strand, within Psyr_2841 at 3414.056 kb on + strand, within Psyr_2841 at 3414.056 kb on + strand, within Psyr_2841 at 3414.056 kb on + strand, within Psyr_2841
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml remove 3,411,287 + Psyr_2837 0.54 -0.5 3,411,306 - Psyr_2837 0.56 -0.8 3,411,307 + Psyr_2837 0.56 -1.0 3,411,308 - Psyr_2837 0.56 -0.1 3,411,326 - Psyr_2837 0.58 -0.4 3,411,349 + Psyr_2837 0.60 -1.3 3,411,349 + Psyr_2837 0.60 +0.6 3,411,349 + Psyr_2837 0.60 -1.2 3,411,349 + Psyr_2837 0.60 -1.6 3,411,349 + Psyr_2837 0.60 -0.6 3,411,349 + Psyr_2837 0.60 -1.8 3,411,349 + Psyr_2837 0.60 -0.6 3,411,349 + Psyr_2837 0.60 -0.7 3,411,349 + Psyr_2837 0.60 -1.1 3,411,350 - Psyr_2837 0.61 -0.0 3,411,350 - Psyr_2837 0.61 +0.2 3,411,350 - Psyr_2837 0.61 -2.5 3,411,350 - Psyr_2837 0.61 -1.1 3,411,350 - Psyr_2837 0.61 -0.9 3,411,384 + Psyr_2837 0.64 +0.4 3,411,384 + Psyr_2837 0.64 +0.4 3,411,384 + Psyr_2837 0.64 -0.4 3,411,385 - Psyr_2837 0.64 -0.5 3,411,385 - Psyr_2837 0.64 -0.4 3,411,385 - Psyr_2837 0.64 -0.3 3,411,402 - Psyr_2837 0.66 -2.1 3,411,437 + Psyr_2837 0.70 -0.1 3,411,438 - Psyr_2837 0.70 -1.1 3,411,438 - Psyr_2837 0.70 +0.3 3,411,438 - Psyr_2837 0.70 -0.6 3,411,438 - Psyr_2837 0.70 -2.8 3,411,449 + Psyr_2837 0.71 -0.6 3,411,450 - Psyr_2837 0.71 -0.1 3,411,450 - Psyr_2837 0.71 -1.9 3,411,494 + Psyr_2837 0.75 -0.5 3,411,495 - Psyr_2837 0.76 -0.4 3,411,512 + Psyr_2837 0.77 -0.0 3,411,517 + Psyr_2837 0.78 +0.1 3,411,521 + Psyr_2837 0.78 +2.0 3,411,521 + Psyr_2837 0.78 +0.2 3,411,521 + Psyr_2837 0.78 -1.4 3,411,522 - Psyr_2837 0.78 -0.0 3,411,590 + Psyr_2837 0.85 -1.4 3,411,591 - Psyr_2837 0.86 +0.4 3,411,616 + Psyr_2837 0.88 +0.4 3,411,616 + Psyr_2837 0.88 +0.2 3,411,616 + Psyr_2837 0.88 -1.4 3,411,743 + +0.6 3,411,743 + -0.9 3,411,743 + -0.2 3,411,744 - -0.1 3,411,746 + +0.6 3,411,768 - -0.4 3,411,806 - +1.4 3,411,825 + -0.6 3,411,825 + +0.1 3,411,864 + +1.1 3,411,864 + -0.5 3,411,864 + +0.4 3,411,864 + +0.7 3,411,865 - +0.4 3,411,865 - -0.1 3,411,865 - -0.4 3,411,899 + +0.8 3,411,899 + +0.3 3,411,899 + -0.5 3,411,899 + +0.5 3,411,899 + +1.2 3,411,900 - +0.6 3,411,900 - +0.9 3,412,099 + Psyr_2838 0.56 -1.6 3,412,099 + Psyr_2838 0.56 +0.3 3,412,100 - Psyr_2838 0.56 +1.1 3,412,100 - Psyr_2838 0.56 -0.6 3,412,100 - Psyr_2838 0.56 +1.3 3,412,187 + Psyr_2838 0.81 -0.2 3,412,280 + -0.0 3,412,280 + -0.4 3,412,280 + -0.0 3,412,280 + +0.5 3,412,280 + +0.1 3,412,280 + -1.2 3,412,280 + +0.8 3,412,280 + -0.2 3,412,280 + -0.6 3,412,281 - +0.4 3,412,281 - +1.7 3,412,281 - -0.9 3,412,281 - +0.2 3,412,281 - -0.4 3,412,281 - -0.0 3,412,301 + +0.6 3,412,302 - -1.6 3,412,302 - +1.1 3,412,302 - +0.9 3,412,476 + Psyr_2839 0.24 +0.4 3,412,476 + Psyr_2839 0.24 +2.0 3,412,476 + Psyr_2839 0.24 -0.1 3,412,476 + Psyr_2839 0.24 -1.3 3,412,476 + Psyr_2839 0.24 +0.2 3,412,476 + Psyr_2839 0.24 +1.5 3,412,476 + Psyr_2839 0.24 +0.7 3,412,476 + Psyr_2839 0.24 +1.7 3,412,476 + Psyr_2839 0.24 +0.8 3,412,476 + Psyr_2839 0.24 -0.2 3,412,476 + Psyr_2839 0.24 +0.6 3,412,476 + Psyr_2839 0.24 +0.7 3,412,477 - -1.6 3,412,623 + Psyr_2839 0.42 +0.1 3,412,670 + Psyr_2839 0.48 -0.1 3,412,671 - Psyr_2839 0.48 +1.2 3,413,099 - -0.6 3,413,099 - +1.0 3,413,231 + +0.4 3,413,381 - Psyr_2840 0.31 +0.5 3,413,389 - Psyr_2840 0.32 +1.4 3,413,389 - Psyr_2840 0.32 +1.4 3,413,527 - Psyr_2840 0.56 +0.6 3,413,569 + Psyr_2840 0.63 +2.0 3,413,570 - Psyr_2840 0.63 +0.1 3,413,632 + Psyr_2840 0.73 -0.5 3,413,633 - Psyr_2840 0.74 -0.0 3,413,659 + Psyr_2840 0.78 +1.1 3,413,660 - Psyr_2840 0.78 -0.2 3,413,792 + -0.2 3,413,792 + +0.3 3,413,792 + +1.1 3,413,793 - +0.3 3,413,793 - +0.4 3,413,793 - -0.2 3,413,827 + +1.4 3,413,827 + -0.2 3,413,827 + -2.6 3,413,827 + +0.2 3,413,827 + +1.4 3,413,827 + +0.1 3,413,827 + +1.7 3,413,827 + -2.2 3,413,827 + +1.0 3,413,827 + +0.7 3,413,827 + +0.6 3,413,827 + -0.7 3,413,828 - -0.6 3,413,828 - +0.8 3,413,828 - -0.3 3,413,828 - -0.6 3,413,828 - -0.6 3,413,828 - -0.8 3,413,828 - -0.3 3,413,828 - +0.7 3,413,828 - -0.3 3,413,828 - -0.4 3,413,828 - +0.4 3,413,828 - -1.8 3,413,828 - -0.4 3,413,828 - +3.1 3,413,828 - -0.3 3,413,828 - +0.6 3,413,829 + +0.1 3,413,829 + -0.4 3,413,829 + -0.3 3,413,830 - -0.2 3,413,830 - -0.6 3,413,830 - +0.1 3,413,830 - -1.2 3,413,830 - -0.2 3,413,906 + -0.4 3,413,906 + +1.4 3,413,906 + +1.6 3,413,907 - +1.6 3,413,907 - +1.6 3,413,927 + -0.6 3,413,927 + -0.4 3,413,927 + +2.0 3,413,927 + -0.2 3,413,927 + -1.0 3,413,927 + +0.6 3,413,927 + +0.3 3,413,928 - -0.6 3,413,928 - +1.1 3,413,928 - -0.5 3,413,971 + Psyr_2841 0.13 -0.9 3,413,971 + Psyr_2841 0.13 -0.1 3,413,971 + Psyr_2841 0.13 +0.4 3,413,971 + Psyr_2841 0.13 +0.4 3,413,971 + Psyr_2841 0.13 -0.8 3,414,056 + Psyr_2841 0.27 +0.4 3,414,056 + Psyr_2841 0.27 -0.9 3,414,056 + Psyr_2841 0.27 +0.8
Or see this region's nucleotide sequence